7aqa

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "7aqa" [edit=sysop:move=sysop])
Current revision (12:14, 1 February 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7aqa is ON HOLD until Paper Publication
+
==Pseudomonas stutzeri nitrous oxide reductase mutant, H382A==
 +
<StructureSection load='7aqa' size='340' side='right'caption='[[7aqa]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7aqa]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7AQA FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.497&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B3P:2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>B3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CUA:DINUCLEAR+COPPER+ION'>CUA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=K7E:sulfanyl-(tricuprio-$l^{4}-sulfanyl)copper'>K7E</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene>, <scene name='pdbligand=RUQ:(dicuprio-$l^{3}-sulfanyl)-sulfanyl-copper'>RUQ</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7aqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aqa OCA], [https://pdbe.org/7aqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7aqa RCSB], [https://www.ebi.ac.uk/pdbsum/7aqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7aqa ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NOSZ_STUST NOSZ_STUST] Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide.<ref>PMID:3000778</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Nitrous oxide reductase (N2OR) is the only known enzyme reducing environmentally critical nitrous oxide (N2O) to dinitrogen (N2) as the final step of bacterial denitrification. The assembly process of its unique catalytic [4Cu:2S] cluster CuZ remains scarcely understood. Here we report on a mutagenesis study of all seven histidine ligands coordinating this copper center, followed by spectroscopic and structural characterization and based on an established, functional expression system for Pseudomonas stutzeri N2OR in Escherichia coli. While no copper ion was found in the CuZ binding site of variants H129A, H130A, H178A, H326A, H433A and H494A, the H382A variant carried a catalytically inactive [3Cu:2S] center, in which one sulfur ligand, SZ2, had relocated to form a weak hydrogen bond to the sidechain of the nearby lysine residue K454. This link provides sufficient stability to avoid the loss of the sulfide anion. The UV-vis spectra of this cluster are strikingly similar to those of the active enzyme, implying that the flexibility of SZ2 may have been observed before, but not recognized. The sulfide shift changes the metal coordination in CuZ and is thus of high mechanistic interest.
-
Authors: Zhang, L., Bill, E., Kroneck, P.M.H., Einsle, O.
+
A [3Cu:2S] cluster provides insight into the assembly and function of the CuZ site of nitrous oxide reductase.,Zhang L, Bill E, Kroneck PMH, Einsle O Chem Sci. 2021 Jan 15;12(9):3239-3244. doi: 10.1039/d0sc05204c. PMID:34164092<ref>PMID:34164092</ref>
-
Description: Pseudomonas stutzeri nitrous oxide reductase mutant, H382A
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Einsle, O]]
+
<div class="pdbe-citations 7aqa" style="background-color:#fffaf0;"></div>
-
[[Category: Bill, E]]
+
== References ==
-
[[Category: Zhang, L]]
+
<references/>
-
[[Category: Kroneck, P.M.H]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas stutzeri]]
 +
[[Category: Bill E]]
 +
[[Category: Einsle O]]
 +
[[Category: Kroneck PMH]]
 +
[[Category: Zhang L]]

Current revision

Pseudomonas stutzeri nitrous oxide reductase mutant, H382A

PDB ID 7aqa

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools