7kkl
From Proteopedia
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- | ==== | + | ==SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6== |
- | <StructureSection load='7kkl' size='340' side='right'caption='[[7kkl]]' scene=''> | + | <StructureSection load='7kkl' size='340' side='right'caption='[[7kkl]], [[Resolution|resolution]] 2.85Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[7kkl]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KKL FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.85Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kkl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kkl OCA], [https://pdbe.org/7kkl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kkl RCSB], [https://www.ebi.ac.uk/pdbsum/7kkl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kkl ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The SARS-CoV-2 virus enters host cells via an interaction between its Spike protein and the host cell receptor angiotensin converting enzyme 2 (ACE2). By screening a yeast surface-displayed library of synthetic nanobody sequences, we developed nanobodies that disrupt the interaction between Spike and ACE2. Cryogenic electron microscopy (cryo-EM) revealed that one nanobody, Nb6, binds Spike in a fully inactive conformation with its receptor binding domains (RBDs) locked into their inaccessible down-state, incapable of binding ACE2. Affinity maturation and structure-guided design of multivalency yielded a trivalent nanobody, mNb6-tri, with femtomolar affinity for Spike and picomolar neutralization of SARS-CoV-2 infection. mNb6-tri retains function after aerosolization, lyophilization, and heat treatment, which enables aerosol-mediated delivery of this potent neutralizer directly to the airway epithelia. | ||
+ | |||
+ | An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.,Schoof M, Faust B, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesbolle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Deshpande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A Science. 2020 Nov 5. pii: science.abe3255. doi: 10.1126/science.abe3255. PMID:33154106<ref>PMID:33154106</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7kkl" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Antibody 3D structures|Antibody 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Severe acute respiratory syndrome coronavirus 2]] |
+ | [[Category: Synthetic construct]] | ||
+ | [[Category: Anand AA]] | ||
+ | [[Category: Azumaya CM]] | ||
+ | [[Category: Barile-Hill AW]] | ||
+ | [[Category: Barsi-Rhyne B]] | ||
+ | [[Category: Belyy V]] | ||
+ | [[Category: Billesboelle CB]] | ||
+ | [[Category: Boone M]] | ||
+ | [[Category: Brilot AF]] | ||
+ | [[Category: Bulkley D]] | ||
+ | [[Category: Chio CM]] | ||
+ | [[Category: Chio US]] | ||
+ | [[Category: Desphande I]] | ||
+ | [[Category: Dickinson S]] | ||
+ | [[Category: Diwanji D]] | ||
+ | [[Category: Dobzinski N]] | ||
+ | [[Category: Faust BF]] | ||
+ | [[Category: Garcia-Sastre A]] | ||
+ | [[Category: Gupta M]] | ||
+ | [[Category: Gupta S]] | ||
+ | [[Category: Hoppe N]] | ||
+ | [[Category: Jin M]] | ||
+ | [[Category: Kratochvil HT]] | ||
+ | [[Category: Krogan NJ]] | ||
+ | [[Category: Leon K]] | ||
+ | [[Category: Li F]] | ||
+ | [[Category: Liang J]] | ||
+ | [[Category: Liu Y]] | ||
+ | [[Category: Manglik A]] | ||
+ | [[Category: Merz GE]] | ||
+ | [[Category: Moss F]] | ||
+ | [[Category: Nguyen HC]] | ||
+ | [[Category: Nock S]] | ||
+ | [[Category: Ott M]] | ||
+ | [[Category: Pospiech T]] | ||
+ | [[Category: Pourmal S]] | ||
+ | [[Category: Puchades C]] | ||
+ | [[Category: QCRG Structural Biology Consortium]] | ||
+ | [[Category: Ralston CY]] | ||
+ | [[Category: Rezelj V]] | ||
+ | [[Category: Rizo AN]] | ||
+ | [[Category: Sangwan S]] | ||
+ | [[Category: Saunders RA]] | ||
+ | [[Category: Schaefer K]] | ||
+ | [[Category: Schoof MS]] | ||
+ | [[Category: Simoneau CR]] | ||
+ | [[Category: Smith AM]] | ||
+ | [[Category: Sun M]] | ||
+ | [[Category: Swaney DL]] | ||
+ | [[Category: Thompson MC]] | ||
+ | [[Category: Trenker R]] | ||
+ | [[Category: Vignuzzi M]] | ||
+ | [[Category: Walter P]] | ||
+ | [[Category: White KM]] | ||
+ | [[Category: Zha BS]] | ||
+ | [[Category: Zhang K]] | ||
+ | [[Category: Zimanyi M]] |
Current revision
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
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Categories: Large Structures | Severe acute respiratory syndrome coronavirus 2 | Synthetic construct | Anand AA | Azumaya CM | Barile-Hill AW | Barsi-Rhyne B | Belyy V | Billesboelle CB | Boone M | Brilot AF | Bulkley D | Chio CM | Chio US | Desphande I | Dickinson S | Diwanji D | Dobzinski N | Faust BF | Garcia-Sastre A | Gupta M | Gupta S | Hoppe N | Jin M | Kratochvil HT | Krogan NJ | Leon K | Li F | Liang J | Liu Y | Manglik A | Merz GE | Moss F | Nguyen HC | Nock S | Ott M | Pospiech T | Pourmal S | Puchades C | QCRG Structural Biology Consortium | Ralston CY | Rezelj V | Rizo AN | Sangwan S | Saunders RA | Schaefer K | Schoof MS | Simoneau CR | Smith AM | Sun M | Swaney DL | Thompson MC | Trenker R | Vignuzzi M | Walter P | White KM | Zha BS | Zhang K | Zimanyi M