This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6cle

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:29, 13 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6cle' size='340' side='right'caption='[[6cle]], [[Resolution|resolution]] 1.01&Aring;' scene=''>
<StructureSection load='6cle' size='340' side='right'caption='[[6cle]], [[Resolution|resolution]] 1.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6cle]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CLE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6CLE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6cle]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CLE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CLE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution|Resolution]] 1.01&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6cle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cle OCA], [http://pdbe.org/6cle PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cle RCSB], [http://www.ebi.ac.uk/pdbsum/6cle PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cle ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cle FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cle OCA], [https://pdbe.org/6cle PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cle RCSB], [https://www.ebi.ac.uk/pdbsum/6cle PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cle ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Micro-crystal electron diffraction (MicroED) combines the efficiency of electron scattering with diffraction to allow structure determination from nano-sized crystalline samples in cryoelectron microscopy (cryo-EM). It has been used to solve structures of a diverse set of biomolecules and materials, in some cases to sub-atomic resolution. However, little is known about the damaging effects of the electron beam on samples during such measurements. We assess global and site-specific damage from electron radiation on nanocrystals of proteinase K and of a prion hepta-peptide and find that the dynamics of electron-induced damage follow well-established trends observed in X-ray crystallography. Metal ions are perturbed, disulfide bonds are broken, and acidic side chains are decarboxylated while the diffracted intensities decay exponentially with increasing exposure. A better understanding of radiation damage in MicroED improves our assessment and processing of all types of cryo-EM data.
 
- 
-
Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.,Hattne J, Shi D, Glynn C, Zee CT, Gallagher-Jones M, Martynowycz MW, Rodriguez JA, Gonen T Structure. 2018 May 1;26(5):759-766.e4. doi: 10.1016/j.str.2018.03.021. Epub 2018, Apr 26. PMID:29706530<ref>PMID:29706530</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 6cle" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Gallagher-Jones, M]]
+
[[Category: Synthetic construct]]
-
[[Category: Glynn, C]]
+
[[Category: Gallagher-Jones M]]
-
[[Category: Gonen, T]]
+
[[Category: Glynn C]]
-
[[Category: Hattne, J]]
+
[[Category: Gonen T]]
-
[[Category: Martynowycz, M W]]
+
[[Category: Hattne J]]
-
[[Category: Rodriguez, J A]]
+
[[Category: Martynowycz MW]]
-
[[Category: Shi, D]]
+
[[Category: Rodriguez JA]]
-
[[Category: Zee, C T]]
+
[[Category: Shi D]]
-
[[Category: Amyloid fibril]]
+
[[Category: Zee C-T]]
-
[[Category: Prion]]
+
-
[[Category: Protein fibril]]
+
-
[[Category: Zinc binding]]
+

Current revision

1.01 A MicroED structure of GSNQNNF at 1.3 e- / A^2

PDB ID 6cle

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools