This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6mxq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:36, 1 May 2024) (edit) (undo)
 
Line 1: Line 1:
==Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation==
==Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation==
-
<StructureSection load='6mxq' size='340' side='right'caption='[[6mxq]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+
<StructureSection load='6mxq' size='340' side='right'caption='[[6mxq]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6mxq]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MXQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6MXQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6mxq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MXQ FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6mxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mxq OCA], [http://pdbe.org/6mxq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mxq RCSB], [http://www.ebi.ac.uk/pdbsum/6mxq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mxq ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mxq OCA], [https://pdbe.org/6mxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mxq RCSB], [https://www.ebi.ac.uk/pdbsum/6mxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mxq ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Specialized translation initiation is a novel form of regulation of protein synthesis, whereby RNA structures within the 5'-UTR regulate translation rates of specific mRNAs. Similar to internal ribosome entry sites (IRESs), specialized translation initiation requires the recruitment of eukaryotic initiation factor 3 (eIF3), but also requires cap recognition by eIF3d, a new 5'-m(7)GTP recognizing protein. How these RNA structures mediate eIF3 recruitment to affect translation of specific mRNAs remains unclear. Here, we report the nuclear magnetic resonance (NMR) structure of a stem-loop within the c-JUN 5' UTR recognized by eIF3 and essential for specialized translation initiation of this well-known oncogene. The structure exhibits similarity to eIF3 recognizing motifs found in hepatitis C virus (HCV)-like IRESs, suggesting mechanistic similarities. This work establishes the RNA structural features involved in c-JUN specialized translation initiation and provides a basis to search for small molecule inhibitors of aberrant expression of the proto-oncogenic c-JUN.
 
- 
-
Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.,Walker MJ, Shortridge MD, Albin DD, Cominsky LY, Varani G J Mol Biol. 2020 Mar 27;432(7):1841-1855. doi: 10.1016/j.jmb.2020.01.001. Epub, 2020 Jan 14. PMID:31953146<ref>PMID:31953146</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 6mxq" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Shortridge, M]]
+
[[Category: Shortridge M]]
-
[[Category: Varani, G]]
+
[[Category: Varani G]]
-
[[Category: Walker, M]]
+
[[Category: Walker M]]
-
[[Category: C-jun]]
+
-
[[Category: Cap-dependent]]
+
-
[[Category: Eif3]]
+
-
[[Category: Mrna]]
+
-
[[Category: Rna]]
+
-
[[Category: Specialized translation initiation]]
+

Current revision

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

PDB ID 6mxq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools