1k6z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:09, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<StructureSection load='1k6z' size='340' side='right'caption='[[1k6z]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='1k6z' size='340' side='right'caption='[[1k6z]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1k6z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6Z OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1K6Z FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1k6z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K6Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K6Z FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1huf|1huf]], [[1g9u|1g9u]], [[1jl5|1jl5]], [[1jyo|1jyo]], [[1k3e|1k3e]], [[1k3s|1k3s]]</div></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k6z OCA], [https://pdbe.org/1k6z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k6z RCSB], [https://www.ebi.ac.uk/pdbsum/1k6z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k6z ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SycE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1k6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k6z OCA], [http://pdbe.org/1k6z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k6z RCSB], [http://www.ebi.ac.uk/pdbsum/1k6z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1k6z ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/YERA_YERPE YERA_YERPE]] Positive regulator of YopE.
+
[https://www.uniprot.org/uniprot/YERA_YERPE YERA_YERPE] Positive regulator of YopE.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 17: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k6z_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k6z_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 36: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Evdokimov, A G]]
+
[[Category: Yersinia pestis]]
-
[[Category: Routzahn, K M]]
+
[[Category: Evdokimov AG]]
-
[[Category: Tropea, J E]]
+
[[Category: Routzahn KM]]
-
[[Category: Waugh, D S]]
+
[[Category: Tropea JE]]
-
[[Category: Chaperone]]
+
[[Category: Waugh DS]]
-
[[Category: Secretion]]
+
-
[[Category: Toxin]]
+
-
[[Category: Yersinia pesti]]
+

Current revision

Crystal Structure of the Yersinia Secretion Chaperone SycE

PDB ID 1k6z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools