6svc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:08, 19 June 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Protein allostery of the WW domain at atomic resolution: apo structure==
==Protein allostery of the WW domain at atomic resolution: apo structure==
-
<StructureSection load='6svc' size='340' side='right'caption='[[6svc]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='6svc' size='340' side='right'caption='[[6svc]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6svc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SVC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SVC FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SVC FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6svh|6svh]], [[6sve|6sve]]</div></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PIN1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6svc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6svc OCA], [https://pdbe.org/6svc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6svc RCSB], [https://www.ebi.ac.uk/pdbsum/6svc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6svc ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6svc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6svc OCA], [http://pdbe.org/6svc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6svc RCSB], [http://www.ebi.ac.uk/pdbsum/6svc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6svc ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/PIN1_HUMAN PIN1_HUMAN]] Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation. Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.<ref>PMID:15664191</ref> <ref>PMID:16644721</ref> <ref>PMID:21497122</ref>
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Protein allostery is a phenomenon involving the long range coupling between two distal sites in a protein. In order to elucidate allostery at atomic resoluion on the ligand-binding WW domain of the enzyme Pin1, multistate structures were calculated from exact nuclear Overhauser effect (eNOE). In its free form, the protein undergoes a microsecond exchange between two states, one of which is predisposed to interact with its parent catalytic domain. In presence of the positive allosteric ligand, the equilibrium between the two states is shifted towards domain-domain interaction, suggesting a population shift model. In contrast, the allostery-suppressing ligand decouples the side-chain arrangement at the inter-domain interface thereby reducing the inter-domain interaction. As such, this mechanism is an example of dynamic allostery. The presented distinct modes of action highlight the power of the interplay between dynamics and function in the biological activity of proteins.
 
- 
-
Protein Allostery at Atomic Resolution.,Strotz D, Orts J, Kadavath H, Friedmann M, Ghosh D, Olsson S, Chi CN, Pokharna A, Guntert P, Vogeli B, Riek R Angew Chem Int Ed Engl. 2020 Aug 14. doi: 10.1002/anie.202008734. PMID:32797659<ref>PMID:32797659</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 6svc" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Peptidylprolyl isomerase]]
+
[[Category: Friedmann M]]
-
[[Category: Friedmann, M]]
+
[[Category: Guntert P]]
-
[[Category: Guntert, P]]
+
[[Category: Orts J]]
-
[[Category: Orts, J]]
+
[[Category: Riek R]]
-
[[Category: Riek, R]]
+
[[Category: Strotz D]]
-
[[Category: Strotz, D]]
+
[[Category: Vogeli B]]
-
[[Category: Vogeli, B]]
+
-
[[Category: Peptide binding protein]]
+
-
[[Category: Structure from cyana 3 98 12]]
+

Current revision

Protein allostery of the WW domain at atomic resolution: apo structure

PDB ID 6svc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools