User:Eric Martz/Sandbox 17

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PNGJ scene and caption tests

This page created 2020/12/16 after Jaim made changes to enable caption editing.

1. . This loads Image:6zgi-cavities.pngj

When scene 1 was re-loaded, the caption DID APPEAR for editing, but in JSmol, the isosurfaces from the PNGJ file were not displayed.

2. .

As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly.

2020-12-17:

3. , after further fixes by Jaim (2020-12-17).

BOTH SCENE AND CAPTION ARE CORRECT. HURRAY!

Scenes 4 and 5 use Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj.

4. . These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second!

2020-12-19:

5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly.

I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. < can be saved, but confuses JSmol which expects a new command after the ';'.

Proteopedia's wiki lacks Template:Font_color: red text?.

6. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors.

2020-12-21:

7. (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS.

8. . WORKS WITH COLORED CAPTION. COLORS done with span classes.

9. . DOES NOT WORK.

10. . STILL DOES NOT WORK. Evidently style spans are not supported in captions.

11. . WORKS.

PDB (not PNGJ) scenes

12. . WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP!

13: for Oxygen. FAILS.

14: : {{Font color|red|red text}}. DOES NOT WORK.

15: . FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz

Retrieved from "http://52.214.119.220/wiki/index.php/User:Eric_Martz/Sandbox_17"

@@ Line 63: / Line 63: @@
 -12-21:
-. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/1'>Re-try of the 4-isosurface PNGJ</scene> (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj).
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/1'>Re-try of the 4-isosurface PNGJ</scene> (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS.
-. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/2'>Same scene as 7 with caption edited to include colored text</scene>.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/2'>Same scene as 7 with caption edited to include colored text</scene>. WORKS WITH COLORED CAPTION. COLORS done with span classes.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/3'>Same as 8 but with yellow caption text done as a style span</scene>. DOES NOT WORK.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/4'>Same as 9 but with non-breaking space codes removed</scene>. STILL DOES NOT WORK. Evidently style spans are not supported in captions.
+. <scene name='87/870563/2020_12_21_retry_4_isosurfaces/5'>Yellow background text changed to a class span</scene>. WORKS.
+====PDB (not PNGJ) scenes====
+. <scene name='87/870563/No_isosurfaces_1d66/2'>A simple scene (no isosurfaces) for testing caption text coloring</scene>. WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP!
+: <scene name='87/870563/No_isosurfaces_1d66/3'>Test using a color scheme template</scene> for Oxygen. FAILS.
+: <scene name='87/870563/No_isosurfaces_1d66/4'>Single color template method</scene>: <nowiki>{{Font color|red|red text}}</nowiki>. DOES NOT WORK.
+: <scene name='87/870563/No_isosurfaces_1d66/5'>Span style method</scene>. FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.
 </StructureSection>

User:Eric Martz/Sandbox 17

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PNGJ scene and caption tests

PDB (not PNGJ) scenes

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