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| | <StructureSection load='6lol' size='340' side='right'caption='[[6lol]], [[Resolution|resolution]] 2.75Å' scene=''> | | <StructureSection load='6lol' size='340' side='right'caption='[[6lol]], [[Resolution|resolution]] 2.75Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6lol]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LOL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LOL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6lol]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2002017 Shigella flexneri 2002017]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LOL FirstGlance]. <br> |
| - | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RING-type_E3_ubiquitin_transferase RING-type E3 ubiquitin transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.27 2.3.2.27] </span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lol OCA], [http://pdbe.org/6lol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lol RCSB], [http://www.ebi.ac.uk/pdbsum/6lol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lol ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lol OCA], [https://pdbe.org/6lol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lol RCSB], [https://www.ebi.ac.uk/pdbsum/6lol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lol ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/IPA9_SHIF2 IPA9_SHIF2]] Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is an E3 ubiquitin ligase that interferes with host's ubiquitination pathway and modulates the acute inflammatory responses, thus facilitating bacterial colonization within the host cell. | + | [https://www.uniprot.org/uniprot/IPA9_SHIF2 IPA9_SHIF2] Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is an E3 ubiquitin ligase that interferes with host's ubiquitination pathway and modulates the acute inflammatory responses, thus facilitating bacterial colonization within the host cell. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6lol" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6lol" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: RING-type E3 ubiquitin transferase]] | + | [[Category: Shigella flexneri 2002017]] |
| - | [[Category: Huang, H]] | + | [[Category: Huang H]] |
| - | [[Category: Ye, Y]] | + | [[Category: Ye Y]] |
| - | [[Category: E3]]
| + | |
| - | [[Category: Ipah9 8]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
IPA9_SHIF2 Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is an E3 ubiquitin ligase that interferes with host's ubiquitination pathway and modulates the acute inflammatory responses, thus facilitating bacterial colonization within the host cell.
Publication Abstract from PubMed
IpaH enzymes are bacterial E3 ligases targeting host proteins for ubiquitylation. Two autoinhibition modes of IpaH enzymes have been proposed based on the relative positioning of the Leucine-rich repeat domain (LRR) with respect to the NEL domain. In mode 1, substrate-binding competitively displaces the interactions between theLRR and NEL to relieve autoinhibition. However, the molecular basis for mode 2 is unclear. Here, we present the crystal structures of Shigella IpaH9.8 and the LRR of IpaH9.8 in complex with the substrate of human guanylate-binding protein 1 (hGBP1). A hydrophobic cluster in the C-terminus of IpaH9.8(LRR) forms a hydrophobic pocket involved in binding the NEL domain, and the binding is important for IpaH9.8 autoinhibition. Substrate-binding destabilizes the hydrophobic cluster by inducing conformational changes of IpaH9.8(LRR). Arg166 and Phe187 in IpaH9.8(LRR) function as sensors for substrate-binding. Collectively, our findings provide insights into the molecular mechanisms for the actication of IpaH9.8 in autoinhibition mode 2.
Substrate-binding destabilizes the hydrophobic cluster to relieve the autoinhibition of bacterial ubiquitin ligase IpaH9.8.,Ye Y, Xiong Y, Huang H Commun Biol. 2020 Dec 10;3(1):752. doi: 10.1038/s42003-020-01492-1. PMID:33303953[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ye Y, Xiong Y, Huang H. Substrate-binding destabilizes the hydrophobic cluster to relieve the autoinhibition of bacterial ubiquitin ligase IpaH9.8. Commun Biol. 2020 Dec 10;3(1):752. doi: 10.1038/s42003-020-01492-1. PMID:33303953 doi:http://dx.doi.org/10.1038/s42003-020-01492-1
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