1v9x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:00, 28 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Solution structure of the first Zn-finger domain of poly(ADP-ribose) polymerase-1==
==Solution structure of the first Zn-finger domain of poly(ADP-ribose) polymerase-1==
-
<StructureSection load='1v9x' size='340' side='right'caption='[[1v9x]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='1v9x' size='340' side='right'caption='[[1v9x]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1v9x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9X OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1V9X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1v9x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V9X FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA RAFL09-59-L22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_ADP-ribosyltransferase NAD(+) ADP-ribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.30 2.4.2.30] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9x OCA], [https://pdbe.org/1v9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v9x RCSB], [https://www.ebi.ac.uk/pdbsum/1v9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9x ProSAT], [https://www.topsan.org/Proteins/RSGI/1v9x TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1v9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9x OCA], [http://pdbe.org/1v9x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v9x RCSB], [http://www.ebi.ac.uk/pdbsum/1v9x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9x ProSAT], [http://www.topsan.org/Proteins/RSGI/1v9x TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PARP1_ARATH PARP1_ARATH]] Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity).
+
[https://www.uniprot.org/uniprot/PARP1_ARATH PARP1_ARATH] Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 26: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arath]]
+
[[Category: Arabidopsis thaliana]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hayashi, F]]
+
[[Category: Hayashi F]]
-
[[Category: Nagashima, T]]
+
[[Category: Nagashima T]]
-
[[Category: Structural genomic]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S]]
+
-
[[Category: Cell death]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Inflammation]]
+
-
[[Category: Parp]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Transferase]]
+

Current revision

Solution structure of the first Zn-finger domain of poly(ADP-ribose) polymerase-1

PDB ID 1v9x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools