7drd

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(New page: '''Unreleased structure''' The entry 7drd is ON HOLD Authors: Mori, T., Moriya, T., Adachi, N., Senda, T., Abe, I. Description: Cryo-EM structure of DgpB-C at 2.85 angstrom resolution ...)
Current revision (05:42, 5 June 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7drd is ON HOLD
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==Cryo-EM structure of DgpB-C at 2.85 angstrom resolution==
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<StructureSection load='7drd' size='340' side='right'caption='[[7drd]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7drd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_intestinal_bacterium_PUE Human intestinal bacterium PUE]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRD FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7drd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7drd OCA], [https://pdbe.org/7drd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7drd RCSB], [https://www.ebi.ac.uk/pdbsum/7drd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7drd ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A3Q9WXL1_UNCXX A0A3Q9WXL1_UNCXX]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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C-Glycosides, in which a sugar moiety is linked via a carbon-carbon (C-C) bond to a non-sugar moiety (aglycone), are found in our food and medicine. The C-C bond is cleaved by intestinal microbes and the resulting aglycones exert various bioactivities. Although the enzymes responsible for the reactions have been identified, their catalytic mechanisms and the generality of the reactions in nature remain to be explored. Here, we present the identification and structural basis for the activation of xenobiotic C-glycosides by heterocomplex C-deglycosylation enzymes from intestinal and soil bacteria. They are found to be metal-dependent enzymes exhibiting broad substrate specificity toward C-glycosides. X-ray crystallographic and cryo-electron microscopic analyses, as well as structure-based mutagenesis, reveal the structural details of these enzymes and the detailed catalytic mechanisms of their remarkable C-C bond cleavage reactions. Furthermore, bioinformatic and biochemical analyses suggest that the C-deglycosylation enzymes are widely distributed in the gut, soil, and marine bacteria.
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Authors: Mori, T., Moriya, T., Adachi, N., Senda, T., Abe, I.
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C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.,Mori T, Kumano T, He H, Watanabe S, Senda M, Moriya T, Adachi N, Hori S, Terashita Y, Kawasaki M, Hashimoto Y, Awakawa T, Senda T, Abe I, Kobayashi M Nat Commun. 2021 Nov 2;12(1):6294. doi: 10.1038/s41467-021-26585-1. PMID:34728636<ref>PMID:34728636</ref>
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Description: Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Adachi, N]]
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<div class="pdbe-citations 7drd" style="background-color:#fffaf0;"></div>
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[[Category: Senda, T]]
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== References ==
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[[Category: Abe, I]]
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<references/>
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[[Category: Mori, T]]
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__TOC__
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[[Category: Moriya, T]]
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</StructureSection>
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[[Category: Human intestinal bacterium PUE]]
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[[Category: Large Structures]]
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[[Category: Abe I]]
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[[Category: Adachi N]]
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[[Category: Mori T]]
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[[Category: Moriya T]]
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[[Category: Senda T]]

Current revision

Cryo-EM structure of DgpB-C at 2.85 angstrom resolution

PDB ID 7drd

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