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| | ==NMR structure of the carboxyl-terminal cysteine domain of the VHv1.1 polydnaviral gene product== | | ==NMR structure of the carboxyl-terminal cysteine domain of the VHv1.1 polydnaviral gene product== |
| - | <StructureSection load='1xi7' size='340' side='right'caption='[[1xi7]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''> | + | <StructureSection load='1xi7' size='340' side='right'caption='[[1xi7]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1xi7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Csiv Csiv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XI7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1xi7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Campoletis_sonorensis_ichnovirus Campoletis sonorensis ichnovirus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XI7 FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1xj1|1xj1]]</div></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pVX900 clone ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10484 CSIV])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi7 OCA], [https://pdbe.org/1xi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1xi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi7 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi7 OCA], [http://pdbe.org/1xi7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xi7 RCSB], [http://www.ebi.ac.uk/pdbsum/1xi7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi7 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q89632_CSIV Q89632_CSIV] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | <jmolCheckbox> | | <jmolCheckbox> |
| | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi7_consurf.spt"</scriptWhenChecked> | | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi7_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
| | </jmolCheckbox> | | </jmolCheckbox> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Csiv]] | + | [[Category: Campoletis sonorensis ichnovirus]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Copie, V]] | + | [[Category: Copie V]] |
| - | [[Category: Einerwold, J]] | + | [[Category: Einerwold J]] |
| - | [[Category: Hapner, K]] | + | [[Category: Hapner K]] |
| - | [[Category: Jaseja, M]] | + | [[Category: Jaseja M]] |
| - | [[Category: Webb, B]] | + | [[Category: Webb B]] |
| - | [[Category: Antiparallel beta sheet structural scaffold]]
| + | |
| - | [[Category: Cystine knot]]
| + | |
| - | [[Category: Viral protein]]
| + | |
| Structural highlights
Function
Q89632_CSIV
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Polydnaviruses are an unusual group of insect viruses that have an obligate symbiotic association with certain parasitic wasps. These viruses are transmitted with the wasp egg during oviposition into lepidopteran insects, enabling the survival and development of the egg inside the host larvae. We report the three-dimensional structure of a novel polydnaviral cysteine-rich motif (cys-motif), identified as the carboxyl-terminal domain of a two cys-motif containing polydnaviral VHv1.1 gene product, abbreviated "C-term VHv1.1". This 65-residue domain was identified experimentally by limited proteolysis of the full-length protein and was subsequently cloned in a bacterial expression system for NMR studies. The C-term VHv1.1 3D structure was determined in solution by two-dimensional (1)H NMR spectroscopy. Calculation of the structure was based on a total of 300 upper distance restraints and 20 dihedral angle constraints, and resulted in an ensemble of 25 representative conformers with an average rmsd of 0.47 A from the mean structure for core backbone atoms. The protein core is made of a four beta-strand scaffold held together in a compact structure by three disulfide bonds, which form a cystine knot. The four beta-strands are arranged in an unusual configuration to form a triple-stranded beta-sheet and double-stranded beta-sheet. Comparison with other classes of cystine knots provides indication that C-term VHv1.1 represents a new and distinct cystine knot motif. This analysis provides a structural basis for interpretation of the genetic and amino acid sequence data classifying polydnavirus gene products as members of cysteine-rich protein families.
Solution structure of the carboxyl-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product: comparison with other cystine knot structural folds.,Einerwold J, Jaseja M, Hapner K, Webb B, Copie V Biochemistry. 2001 Dec 4;40(48):14404-12. PMID:11724552[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Einerwold J, Jaseja M, Hapner K, Webb B, Copie V. Solution structure of the carboxyl-terminal cysteine-rich domain of the VHv1.1 polydnaviral gene product: comparison with other cystine knot structural folds. Biochemistry. 2001 Dec 4;40(48):14404-12. PMID:11724552
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