1xq4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:38, 30 October 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1xq4' size='340' side='right'caption='[[1xq4]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='1xq4' size='340' side='right'caption='[[1xq4]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1xq4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_tussis-convulsivae"_lehmann_and_neumann_1927 "bacterium tussis-convulsivae" lehmann and neumann 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XQ4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XQ4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1xq4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XQ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XQ4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apaG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 "Bacterium tussis-convulsivae" Lehmann and Neumann 1927])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xq4 OCA], [https://pdbe.org/1xq4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xq4 RCSB], [https://www.ebi.ac.uk/pdbsum/1xq4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xq4 ProSAT], [https://www.topsan.org/Proteins/NESGC/1xq4 TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xq4 OCA], [http://pdbe.org/1xq4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xq4 RCSB], [http://www.ebi.ac.uk/pdbsum/1xq4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xq4 ProSAT], [http://www.topsan.org/Proteins/NESGC/1xq4 TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/APAG_BORPE APAG_BORPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 14: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xq/1xq4_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xq/1xq4_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium tussis-convulsivae lehmann and neumann 1927]]
+
[[Category: Bordetella pertussis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Acton TB]]
-
[[Category: Forouhar, F]]
+
[[Category: Forouhar F]]
-
[[Category: Hunt, J F]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Montelione GT]]
-
[[Category: Structural genomic]]
+
[[Category: Tong L]]
-
[[Category: Tong, L]]
+
[[Category: Vorobiev SM]]
-
[[Category: Vorobiev, S M]]
+
[[Category: Xiao R]]
-
[[Category: Xiao, R]]
+
[[Category: Yong W]]
-
[[Category: Yong, W]]
+
-
[[Category: All beta protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal Structure of the Putative ApaA Protein from Bordetella pertussis, Northeast Structural Genomics Target BeR40

PDB ID 1xq4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools