1xu1
From Proteopedia
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<StructureSection load='1xu1' size='340' side='right'caption='[[1xu1]], [[Resolution|resolution]] 1.90Å' scene=''> | <StructureSection load='1xu1' size='340' side='right'caption='[[1xu1]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1xu1]] is a 6 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1xu1]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XU1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XU1 FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | |
- | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xu1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xu1 OCA], [https://pdbe.org/1xu1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xu1 RCSB], [https://www.ebi.ac.uk/pdbsum/1xu1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xu1 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
- | == Disease == | ||
- | [[http://www.uniprot.org/uniprot/TR13B_HUMAN TR13B_HUMAN]] Defects in TNFRSF13B are the cause of immunodeficiency common variable type 2 (CVID2) [MIM:[http://omim.org/entry/240500 240500]]. CVID2 is a primary immunodeficiency characterized by antibody deficiency, hypogammaglobulinemia, recurrent bacterial infections and an inability to mount an antibody response to antigen. The defect results from a failure of B-cell differentiation and impaired secretion of immunoglobulins; the numbers of circulating B-cells is usually in the normal range, but can be low.<ref>PMID:16007086</ref> Defects in TNFRSF13B are a cause of immunoglobulin A deficiency 2 (IGAD2) [MIM:[http://omim.org/entry/609529 609529]]. Selective deficiency of immunoglobulin A (IGAD) is the most common form of primary immunodeficiency, with an incidence of approximately 1 in 600 individuals in the western world. Individuals with symptomatic IGAD often have deficiency of IgG subclasses or decreased antibody response to carbohydrate antigens such as pneumococcal polysaccharide vaccine. Individuals with IGAD also suffer from recurrent sinopulmonary and gastrointestinal infections and have an increased incidence of autoimmune disorders and of lymphoid and non-lymphoid malignancies. In vitro studies have suggested that some individuals with IGAD have impaired isotype class switching to IgA and others may have a post-switch defect. IGAD and CVID have been known to coexist in families. Some individuals initially present with IGAD1 and then develop CVID. These observations suggest that some cases of IGAD and CVID may have a common etiology.<ref>PMID:16007086</ref> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/TNF13_MOUSE TNF13_MOUSE] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xu/1xu1_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xu/1xu1_consurf.spt"</scriptWhenChecked> | ||
- | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
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==See Also== | ==See Also== | ||
*[[Tumor necrosis factor ligand superfamily 3D structures|Tumor necrosis factor ligand superfamily 3D structures]] | *[[Tumor necrosis factor ligand superfamily 3D structures|Tumor necrosis factor ligand superfamily 3D structures]] | ||
- | *[[Tumor necrosis factor receptor 3D structures|Tumor necrosis factor receptor 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Mus musculus]] |
- | [[Category: Gordon | + | [[Category: Gordon NC]] |
- | [[Category: Hymowitz | + | [[Category: Hymowitz SG]] |
- | [[Category: Kelley | + | [[Category: Kelley RF]] |
- | [[Category: Pan | + | [[Category: Pan B]] |
- | [[Category: Patel | + | [[Category: Patel DR]] |
- | [[Category: Runyon | + | [[Category: Runyon S]] |
- | [[Category: Shriver | + | [[Category: Shriver SK]] |
- | [[Category: Skelton | + | [[Category: Skelton NJ]] |
- | [[Category: Starovasnik | + | [[Category: Starovasnik MA]] |
- | [[Category: Wallweber | + | [[Category: Wallweber HJA]] |
- | [[Category: Yan | + | [[Category: Yan M]] |
- | [[Category: Yin | + | [[Category: Yin J]] |
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Current revision
The crystal structure of APRIL bound to TACI
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Categories: Homo sapiens | Large Structures | Mus musculus | Gordon NC | Hymowitz SG | Kelley RF | Pan B | Patel DR | Runyon S | Shriver SK | Skelton NJ | Starovasnik MA | Wallweber HJA | Yan M | Yin J