1y1r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:51, 23 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1y1r' size='340' side='right'caption='[[1y1r]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
<StructureSection load='1y1r' size='340' side='right'caption='[[1y1r]], [[Resolution|resolution]] 2.11&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1y1r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1R OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Y1R FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1y1r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y1R FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BJE:2,2-Anhydro-(1-beta-D-ribofuranosyl)uracil'>BJE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.11&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1sj9|1sj9]], [[1ryz|1ryz]], [[1y1q|1y1q]], [[1y1s|1y1s]], [[1y1t|1y1t]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BJE:2,2-Anhydro-(1-beta-D-ribofuranosyl)uracil'>BJE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UDP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1r OCA], [https://pdbe.org/1y1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y1r RCSB], [https://www.ebi.ac.uk/pdbsum/1y1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1r ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_phosphorylase Uridine phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.3 2.4.2.3] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1y1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1r OCA], [http://pdbe.org/1y1r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1r RCSB], [http://www.ebi.ac.uk/pdbsum/1y1r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1r ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY]] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
+
[https://www.uniprot.org/uniprot/UDP_SALTY UDP_SALTY] Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 28: Line 26:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Salty]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Uridine phosphorylase]]
+
[[Category: Betzel C]]
-
[[Category: Betzel, C]]
+
[[Category: Dontsova MV]]
-
[[Category: Dontsova, M V]]
+
[[Category: Ealick SE]]
-
[[Category: Ealick, S E]]
+
[[Category: Gabdoulkhakov AG]]
-
[[Category: Gabdoulkhakov, A G]]
+
[[Category: Kachalova GS]]
-
[[Category: Kachalova, G S]]
+
[[Category: Mikhailov AM]]
-
[[Category: Mikhailov, A M]]
+
-
[[Category: Nucleoside phosphorylase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with Inhibitor and Phosphate Ion at 2.11A Resolution

PDB ID 1y1r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools