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1ydy

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Current revision (06:55, 23 August 2023) (edit) (undo)
 
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<StructureSection load='1ydy' size='340' side='right'caption='[[1ydy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='1ydy' size='340' side='right'caption='[[1ydy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1ydy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YDY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1ydy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1t8q|1t8q]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glpQ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydy OCA], [https://pdbe.org/1ydy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydy RCSB], [https://www.ebi.ac.uk/pdbsum/1ydy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydy TOPSAN]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ydy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydy OCA], [http://pdbe.org/1ydy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ydy RCSB], [http://www.ebi.ac.uk/pdbsum/1ydy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydy ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1ydy TOPSAN]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI]] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
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[https://www.uniprot.org/uniprot/GLPQ_ECOLI GLPQ_ECOLI] Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus coli migula 1895]]
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[[Category: Escherichia coli]]
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[[Category: Glycerophosphodiester phosphodiesterase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Almo, S C]]
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[[Category: Almo SC]]
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[[Category: Burley, S K]]
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[[Category: Burley SK]]
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[[Category: Fedorov, E]]
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[[Category: Fedorov E]]
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[[Category: Malashkevich, V N]]
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[[Category: Malashkevich VN]]
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[[Category: Structural genomic]]
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[[Category: Hydrolase]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: Phosphodiesterase]]
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[[Category: PSI, Protein structure initiative]]
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Current revision

Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli

PDB ID 1ydy

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