This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1z85

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:42, 25 January 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1z85' size='340' side='right'caption='[[1z85]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
<StructureSection load='1z85' size='340' side='right'caption='[[1z85]], [[Resolution|resolution]] 2.12&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1z85]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thema Thema]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z85 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Z85 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1z85]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z85 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z85 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z85 OCA], [https://pdbe.org/1z85 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z85 RCSB], [https://www.ebi.ac.uk/pdbsum/1z85 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z85 ProSAT], [https://www.topsan.org/Proteins/JCSG/1z85 TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TM1380 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 THEMA])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1z85 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z85 OCA], [http://pdbe.org/1z85 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z85 RCSB], [http://www.ebi.ac.uk/pdbsum/1z85 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z85 ProSAT], [http://www.topsan.org/Proteins/JCSG/1z85 TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q9X1A0_THEMA Q9X1A0_THEMA]] Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity).[PIRNR:PIRNR015601]
+
[https://www.uniprot.org/uniprot/Q9X1A0_THEMA Q9X1A0_THEMA] Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity).[PIRNR:PIRNR015601]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 24: Line 22:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thema]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Structural genomic]]
+
-
[[Category: Alpha/beta knot fold]]
+
-
[[Category: Jcsg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 A resolution

PDB ID 1z85

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools