We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1dlw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:55, 7 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dlw.gif|left|200px]]
 
-
<!--
+
==X-RAY CRYSTAL STRUCTURE OF TRUNCATED HEMOGLOBIN FROM P.CAUDATUM.==
-
The line below this paragraph, containing "STRUCTURE_1dlw", creates the "Structure Box" on the page.
+
<StructureSection load='1dlw' size='340' side='right'caption='[[1dlw]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dlw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paramecium_caudatum Paramecium caudatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DLW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
{{STRUCTURE_1dlw| PDB=1dlw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dlw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dlw OCA], [https://pdbe.org/1dlw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dlw RCSB], [https://www.ebi.ac.uk/pdbsum/1dlw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dlw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TRHBN_PARCA TRHBN_PARCA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/1dlw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dlw ConSurf].
 +
<div style="clear:both"></div>
-
'''X-RAY CRYSTAL STRUCTURE OF TRUNCATED HEMOGLOBIN FROM P.CAUDATUM.'''
+
==See Also==
-
 
+
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
Small hemoproteins displaying amino acid sequences 20-40 residues shorter than (non-)vertebrate hemoglobins (Hbs) have recently been identified in several pathogenic and non-pathogenic unicellular organisms, and named 'truncated hemoglobins' (trHbs). They have been proposed to be involved not only in oxygen transport but also in other biological functions, such as protection against reactive nitrogen species, photosynthesis or to act as terminal oxidases. Crystal structures of trHbs from the ciliated protozoan Paramecium caudatum and the green unicellular alga Chlamydomonas eugametos show that the tertiary structure of both proteins is based on a 'two-over-two' alpha-helical sandwich, reflecting an unprecedented editing of the classical 'three-over-three' alpha-helical globin fold. Based on specific Gly-Gly motifs the tertiary structure accommodates the deletion of the N-terminal A-helix and replacement of the crucial heme-binding F-helix with an extended polypeptide loop. Additionally, concerted structural modifications allow burying of the heme group and define the distal site, which hosts a TyrB10, GlnE7 residue pair. A set of structural and amino acid sequence consensus rules for stabilizing the fold and the bound heme in the trHbs homology subfamily is deduced.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1DLW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paramecium_caudatum Paramecium caudatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DLW OCA].
+
-
 
+
-
==Reference==
+
-
A novel two-over-two alpha-helical sandwich fold is characteristic of the truncated hemoglobin family., Pesce A, Couture M, Dewilde S, Guertin M, Yamauchi K, Ascenzi P, Moens L, Bolognesi M, EMBO J. 2000 Jun 1;19(11):2424-34. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10835341 10835341]
+
[[Category: Paramecium caudatum]]
[[Category: Paramecium caudatum]]
-
[[Category: Single protein]]
+
[[Category: Bolognesi M]]
-
[[Category: Bolognesi, M.]]
+
[[Category: Couture M]]
-
[[Category: Couture, M.]]
+
[[Category: Dewilde S]]
-
[[Category: Dewilde, S.]]
+
[[Category: Guertin M]]
-
[[Category: Guertin, M.]]
+
[[Category: Moens L]]
-
[[Category: Moens, L.]]
+
[[Category: Pesce A]]
-
[[Category: Pesce, A.]]
+
-
[[Category: Globin fold truncated hemoglobin non vertebrate hemoglobin]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 14:00:05 2008''
+

Current revision

X-RAY CRYSTAL STRUCTURE OF TRUNCATED HEMOGLOBIN FROM P.CAUDATUM.

PDB ID 1dlw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dlw"
Personal tools