7atd
From Proteopedia
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==Structure of inactive EstD11 S144A in complex with methyl-naproxen== | ==Structure of inactive EstD11 S144A in complex with methyl-naproxen== | ||
| - | <StructureSection load='7atd' size='340' side='right'caption='[[7atd]]' scene=''> | + | <StructureSection load='7atd' size='340' side='right'caption='[[7atd]], [[Resolution|resolution]] 1.45Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ATD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ATD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7atd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Uncultured_bacterium Uncultured bacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ATD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ATD FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7atd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7atd OCA], [https://pdbe.org/7atd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7atd RCSB], [https://www.ebi.ac.uk/pdbsum/7atd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7atd ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=RXH:Naproxen+Methyl+Ester'>RXH</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7atd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7atd OCA], [https://pdbe.org/7atd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7atd RCSB], [https://www.ebi.ac.uk/pdbsum/7atd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7atd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | A novel esterase, EstD11, has been discovered in a hot spring metagenomic library. It is a thermophilic and thermostable esterase with an optimum temperature of 60 degrees C. A detailed substrate preference analysis of EstD11 was done using a library of chromogenic ester substrate that revealed the broad substrate specificity of EstD11 with significant measurable activity against 16 substrates with varied chain length, steric hindrance, aromaticity and flexibility of the linker between the carboxyl and the alcohol moiety of the ester. The tridimensional structures of EstD11 and the inactive mutant have been determined at atomic resolutions. Structural and bioinformatic analysis, confirm that EstD11 belongs to the family IV, the hormone-sensitive lipase (HSL) family, from the alpha/beta-hydrolase superfamily. The canonical alpha/beta-hydrolase domain is completed by a cap domain, composed by two subdomains that can unmask of the active site to allow the substrate to enter. Eight crystallographic complexes were solved with different substrates and reaction products that allowed identification of the hot-spots in the active site underlying the specificity of the protein. Crystallization and/or incubation of EstD11 at high temperature provided unique information on cap dynamics and a first glimpse of enzymatic activity in vivo. Very interestingly, we have discovered a unique Met zipper lining the active site and the cap domains that could be essential in pivotal aspects as thermo-stability and substrate promiscuity in EstD11. | ||
| + | |||
| + | Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.,Miguel-Ruano V, Rivera I, Rajkovic J, Knapik K, Torrado A, Otero JM, Beneventi E, Becerra M, Sanchez-Costa M, Hidalgo A, Berenguer J, Gonzalez-Siso MI, Cruces J, Rua ML, Hermoso JA Comput Struct Biotechnol J. 2021 Feb 10;19:1214-1232. doi:, 10.1016/j.csbj.2021.01.047. eCollection 2021. PMID:33680362<ref>PMID:33680362</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7atd" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Uncultured bacterium]] | ||
[[Category: Hermoso JA]] | [[Category: Hermoso JA]] | ||
[[Category: Miguel-Ruano V]] | [[Category: Miguel-Ruano V]] | ||
[[Category: Rivera I]] | [[Category: Rivera I]] | ||
Current revision
Structure of inactive EstD11 S144A in complex with methyl-naproxen
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