7e6y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:14, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7e6y is ON HOLD until Paper Publication
+
==Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure==
 +
<StructureSection load='7e6y' size='340' side='right'caption='[[7e6y]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E6Y FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6y OCA], [https://pdbe.org/7e6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6y RCSB], [https://www.ebi.ac.uk/pdbsum/7e6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6y ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Channelrhodopsins (ChRs) are microbial light-gated ion channels utilized in optogenetics to control neural activity with light . Light absorption causes retinal chromophore isomerization and subsequent protein conformational changes visualized as optically distinguished intermediates, coupled with channel opening and closing. However, the detailed molecular events underlying channel gating remain unknown. We performed time-resolved serial femtosecond crystallographic analyses of ChR by using an X-ray free electron laser, which revealed conformational changes following photoactivation. The isomerized retinal adopts a twisted conformation and shifts toward the putative internal proton donor residues, consequently inducing an outward shift of TM3, as well as a local deformation in TM7. These early conformational changes in the pore-forming helices should be the triggers that lead to opening of the ion conducting pore.
-
Authors: Oda, K., Nomura, T., Nakane, T., Inoue, K., Ito, S., Vierock, J., Hirata, K., Yamashita, K., Maturana, A., Katayama, K., Ikuta, T., Ishigami, I., Izume, T., Umeda, R., Eguma, R., Oishi, S., Kasuya, G., Kato, T., Kusakizako, T., Shihoya, W., Shimada, H., Takatsuji, T., Takemoto, M., Taniguchi, R., Tomita, A., Nakamura, R., Fukuda, M., Miyauchi, H., Lee, Y., Nango, E., Tanaka, T., Tanaka, R., Sugawara, M., Kimura, T., Shimamura, T., Fujiwara, T., Yamanaka, Y., Owada, S., Joti, Y., Tono, K., Ishitani, R., Hayashi, S., Kandori, H., Hegemann, P., Iwata, S., Kubo, M., Nishizawa, T., Nureki, O.
+
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.,Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, Oishi S, Kasuya G, Kato T, Kusakizako T, Shihoya W, Shimada H, Takatsuji T, Takemoto M, Taniguchi R, Tomita A, Nakamura R, Fukuda M, Miyauchi H, Lee Y, Nango E, Tanaka R, Tanaka T, Sugahara M, Kimura T, Shimamura T, Fujiwara T, Yamanaka Y, Owada S, Joti Y, Tono K, Ishitani R, Hayashi S, Kandori H, Hegemann P, Iwata S, Kubo M, Nishizawa T, Nureki O Elife. 2021 Mar 23;10. pii: 62389. doi: 10.7554/eLife.62389. PMID:33752801<ref>PMID:33752801</ref>
-
Description: Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Nureki, O]]
+
<div class="pdbe-citations 7e6y" style="background-color:#fffaf0;"></div>
-
[[Category: Shimamura, T]]
+
== References ==
-
[[Category: Miyauchi, H]]
+
<references/>
-
[[Category: Izume, T]]
+
__TOC__
-
[[Category: Takatsuji, T]]
+
</StructureSection>
-
[[Category: Kimura, T]]
+
[[Category: Large Structures]]
-
[[Category: Nomura, T]]
+
[[Category: Eguma R]]
-
[[Category: Kandori, H]]
+
[[Category: Fujiwara T]]
-
[[Category: Ishigami, I]]
+
[[Category: Fukuda M]]
-
[[Category: Oda, K]]
+
[[Category: Hayashi S]]
-
[[Category: Kubo, M]]
+
[[Category: Hegemann P]]
-
[[Category: Sugawara, M]]
+
[[Category: Hirata K]]
-
[[Category: Shimada, H]]
+
[[Category: Ikuta T]]
-
[[Category: Tomita, A]]
+
[[Category: Inoue K]]
-
[[Category: Nishizawa, T]]
+
[[Category: Ishigami I]]
-
[[Category: Iwata, S]]
+
[[Category: Ishitani R]]
-
[[Category: Owada, S]]
+
[[Category: Ito S]]
-
[[Category: Yamashita, K]]
+
[[Category: Iwata S]]
-
[[Category: Ito, S]]
+
[[Category: Izume T]]
-
[[Category: Taniguchi, R]]
+
[[Category: Joti Y]]
-
[[Category: Vierock, J]]
+
[[Category: Kandori H]]
-
[[Category: Shihoya, W]]
+
[[Category: Kasuya G]]
-
[[Category: Hirata, K]]
+
[[Category: Katayama K]]
-
[[Category: Nango, E]]
+
[[Category: Kato T]]
-
[[Category: Kato, T]]
+
[[Category: Kimura T]]
-
[[Category: Ishitani, R]]
+
[[Category: Kubo M]]
-
[[Category: Tanaka, R]]
+
[[Category: Kusakizako T]]
-
[[Category: Maturana, A]]
+
[[Category: Lee Y]]
-
[[Category: Katayama, K]]
+
[[Category: Maturana AD]]
-
[[Category: Yamanaka, Y]]
+
[[Category: Miyauchi H]]
-
[[Category: Hegemann, P]]
+
[[Category: Nakamura R]]
-
[[Category: Tanaka, T]]
+
[[Category: Nakane T]]
-
[[Category: Fukuda, M]]
+
[[Category: Nango E]]
-
[[Category: Hayashi, S]]
+
[[Category: Nishizawa T]]
-
[[Category: Takemoto, M]]
+
[[Category: Nomura T]]
-
[[Category: Tono, K]]
+
[[Category: Nureki O]]
-
[[Category: Nakamura, R]]
+
[[Category: Oda K]]
-
[[Category: Eguma, R]]
+
[[Category: Oishi S]]
-
[[Category: Nakane, T]]
+
[[Category: Owada S]]
-
[[Category: Umeda, R]]
+
[[Category: Shihoya W]]
-
[[Category: Fujiwara, T]]
+
[[Category: Shimada H]]
-
[[Category: Inoue, K]]
+
[[Category: Shimamura T]]
-
[[Category: Kusakizako, T]]
+
[[Category: Sugahara M]]
-
[[Category: Joti, Y]]
+
[[Category: Takatsuji T]]
-
[[Category: Lee, Y]]
+
[[Category: Takemoto M]]
-
[[Category: Kasuya, G]]
+
[[Category: Tanaka R]]
-
[[Category: Oishi, S]]
+
[[Category: Tanaka T]]
-
[[Category: Ikuta, T]]
+
[[Category: Taniguchi R]]
 +
[[Category: Tomita A]]
 +
[[Category: Tono K]]
 +
[[Category: Umeda R]]
 +
[[Category: Vierock J]]
 +
[[Category: Yamanaka Y]]
 +
[[Category: Yamashita K]]

Current revision

Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin: 1 microsecond structure

PDB ID 7e6y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools