6z0j
From Proteopedia
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==Crystal structure of laccase from Pediococcus acidilactici Pa5930 (Tris-HCl pH 8.5)== | ==Crystal structure of laccase from Pediococcus acidilactici Pa5930 (Tris-HCl pH 8.5)== | ||
- | <StructureSection load='6z0j' size='340' side='right'caption='[[6z0j]]' scene=''> | + | <StructureSection load='6z0j' size='340' side='right'caption='[[6z0j]], [[Resolution|resolution]] 2.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0J FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6z0j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_acidilactici_7_4 Pediococcus acidilactici 7_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0J FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0j OCA], [https://pdbe.org/6z0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0j RCSB], [https://www.ebi.ac.uk/pdbsum/6z0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0j ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0j OCA], [https://pdbe.org/6z0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0j RCSB], [https://www.ebi.ac.uk/pdbsum/6z0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0j ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/D2EK17_PEDAC D2EK17_PEDAC] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Prokaryotic laccases are emergent biocatalysts. However, they have not been broadly found and characterized in bacterial organisms, especially in lactic acid bacteria. Recently, a prokaryotic laccase from the lactic acid bacterium Pediococcus acidilactici 5930, which can degrade biogenic amines, was discovered. Thus, our study aimed to shed light on laccases from lactic acid bacteria focusing on two Pediococcus laccases, P. acidilactici 5930 and Pediococcus pentosaceus 4816, which have provided valuable information on their biochemical activities on redox mediators and biogenic amines. Both laccases are able to oxidize canonical substrates as ABTS, ferrocyanide and 2,6-DMP, and non-conventional substrates as biogenic amines. With ABTS as a substrate, they prefer an acidic environment and show sigmoidal kinetic activity, and are rather thermostable. Moreover, this study has provided the first structural view of two lactic acid bacteria laccases, revealing new structural features not seen before in other well-studied laccases, but which seem characteristic for this group of bacteria. We believe that understanding the role of laccases in lactic acid bacteria will have an impact on their biotechnological applications and provide a framework for the development of engineered lactic acid bacteria with enhanced properties. | ||
+ | |||
+ | Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species.,Olmeda I, Casino P, Collins RE, Sendra R, Callejon S, Huesa J, Soares AS, Ferrer S, Pardo I Microb Biotechnol. 2021 Feb 26. doi: 10.1111/1751-7915.13751. PMID:33635570<ref>PMID:33635570</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6z0j" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Pediococcus acidilactici 7_4]] | ||
[[Category: Casino P]] | [[Category: Casino P]] | ||
[[Category: Huesa J]] | [[Category: Huesa J]] | ||
[[Category: Pardo I]] | [[Category: Pardo I]] |
Current revision
Crystal structure of laccase from Pediococcus acidilactici Pa5930 (Tris-HCl pH 8.5)
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