1emm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:21, 23 October 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
<StructureSection load='1emm' size='340' side='right'caption='[[1emm]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='1emm' size='340' side='right'caption='[[1emm]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1emm]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1emm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMM FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>GYS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1emc|1emc]], [[1eme|1eme]], [[1emf|1emf]], [[1emk|1emk]], [[1eml|1eml]], [[2emd|2emd]], [[2emn|2emn]], [[2emo|2emo]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GYS:[(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>GYS</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emm OCA], [https://pdbe.org/1emm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emm RCSB], [https://www.ebi.ac.uk/pdbsum/1emm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emm OCA], [https://pdbe.org/1emm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emm RCSB], [https://www.ebi.ac.uk/pdbsum/1emm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
+
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 15: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/em/1emm_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/em/1emm_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 25: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Palm, G]]
+
[[Category: Palm G]]
-
[[Category: Wlodawer, A]]
+
[[Category: Wlodawer A]]
-
[[Category: Zdanov, A]]
+
[[Category: Zdanov A]]
-
[[Category: Beta-barrel]]
+
-
[[Category: Bioluminescence]]
+
-
[[Category: Fluorescent protein]]
+
-
[[Category: Luminescence]]
+

Current revision

GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT

PDB ID 1emm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools