5vyh

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<StructureSection load='5vyh' size='340' side='right'caption='[[5vyh]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='5vyh' size='340' side='right'caption='[[5vyh]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vyh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VYH FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vyh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VYH FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FOL:FOLIC+ACID'>FOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FOL:FOLIC+ACID'>FOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vyh OCA], [https://pdbe.org/5vyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vyh RCSB], [https://www.ebi.ac.uk/pdbsum/5vyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vyh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vyh OCA], [https://pdbe.org/5vyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vyh RCSB], [https://www.ebi.ac.uk/pdbsum/5vyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vyh ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SPIKE_MERS1 SPIKE_MERS1] Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Interacts with host DPP4 to mediate virla entry.[HAMAP-Rule:MF_04099]<ref>PMID:23486063</ref> Mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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*[[Importin 3D structures|Importin 3D structures]]
*[[Importin 3D structures|Importin 3D structures]]
*[[Sandbox 3001|Sandbox 3001]]
*[[Sandbox 3001|Sandbox 3001]]
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*[[Spike protein|Spike protein]]
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*[[Spike protein 3D structures|Spike protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Mers]]
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[[Category: Middle East respiratory syndrome-related coronavirus]]
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[[Category: McLellan, J S]]
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[[Category: McLellan JS]]
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[[Category: Pallesen, J]]
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[[Category: Pallesen J]]
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[[Category: Wang, N]]
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[[Category: Wang N]]
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[[Category: Ward, A B]]
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[[Category: Ward AB]]
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[[Category: Wrapp, D]]
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[[Category: Wrapp D]]
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[[Category: Fusion glycoprotein]]
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[[Category: Viral protein]]
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[[Category: Virus]]
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Current revision

Crystal Structure of MERS-CoV S1 N-terminal Domain

PDB ID 5vyh

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