This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5bkm
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5bkm is ON HOLD Authors: Description: Category: Unreleased Structures) |
|||
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal Structure of Hip1 (Rv2224c) mutant - S228DHA (dehydroalanine)== | |
| - | + | <StructureSection load='5bkm' size='340' side='right'caption='[[5bkm]], [[Resolution|resolution]] 2.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5bkm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BKM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BKM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.703Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bkm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bkm OCA], [https://pdbe.org/5bkm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bkm RCSB], [https://www.ebi.ac.uk/pdbsum/5bkm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bkm ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/HIP1_MYCTU HIP1_MYCTU] Serine protease that promotes tuberculosis (TB) pathogenesis by promoting the processing and the extracellular release of the M.tuberculosis (Mtb) heat-shock protein GroEL2 (PubMed:18172199, PubMed:24830429, PubMed:28346784). Hip1-dependent cleavage of multimeric GroEL2 results in release of cleaved monomeric GroEL2 into the extracellular milieu. Conversion of multimeric GroEL2 into monomeric GroEL2 is likely to be a mechanism for regulating GroEL2 functions during Mtb pathogenesis (PubMed:24830429). In vitro, exhibits proteolytic activity against synthetic peptides and the general protease substrate azocasein, and exhibits esterase activity against the ester substrate p-nitrophenylbutyrate (PubMed:24830429, PubMed:28346784).<ref>PMID:18172199</ref> <ref>PMID:24830429</ref> <ref>PMID:28346784</ref> Key immunomodulatory virulence factor, which promotes survival in host macrophages and modulates host immune responses (PubMed:18172199, PubMed:21947769, PubMed:24659689). Impacts host innate immune responses by preventing robust macrophage activation (PubMed:18172199, PubMed:21947769). Dampens macrophage pro-inflammatory responses by limiting toll-like receptor 2 (TLR2) activation. It also dampens TLR2-independent activation of the inflammasome and limits secretion of interleukin-18 (IL-18). May act by masking cell surface interactions between TLR2 agonists on Mtb and TLR2 on macrophages (PubMed:21947769). In addition, impacts host adaptive immune responses. It prevents robust maturation of infected dendritic cells (DCs), limits the secretion of key pro-inflammatory cytokines such as IL-12, impairs Ag presentation, and modulates the nature of Ag-specific T-cell responses (PubMed:24659689).<ref>PMID:18172199</ref> <ref>PMID:21947769</ref> <ref>PMID:24659689</ref> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Mycobacterium tuberculosis H37Rv]] | ||
| + | [[Category: Baikovitz J]] | ||
| + | [[Category: Daab A]] | ||
| + | [[Category: Doran MH]] | ||
| + | [[Category: Dunn BM]] | ||
| + | [[Category: Goldfarb NE]] | ||
| + | [[Category: Liu D]] | ||
| + | [[Category: Naffin-Olivos JL]] | ||
| + | [[Category: Petsko GA]] | ||
| + | [[Category: Rengarajan J]] | ||
| + | [[Category: Ringe D]] | ||
| + | [[Category: Sun S]] | ||
| + | [[Category: White A]] | ||
Current revision
Crystal Structure of Hip1 (Rv2224c) mutant - S228DHA (dehydroalanine)
| |||||||||||
Categories: Large Structures | Mycobacterium tuberculosis H37Rv | Baikovitz J | Daab A | Doran MH | Dunn BM | Goldfarb NE | Liu D | Naffin-Olivos JL | Petsko GA | Rengarajan J | Ringe D | Sun S | White A
