7d6q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:30, 6 November 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
====
+
==Crystal structure of the Stx2a==
-
<StructureSection load='7d6q' size='340' side='right'caption='[[7d6q]]' scene=''>
+
<StructureSection load='7d6q' size='340' side='right'caption='[[7d6q]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7d6q]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7D6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7D6Q FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d6q OCA], [https://pdbe.org/7d6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d6q RCSB], [https://www.ebi.ac.uk/pdbsum/7d6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d6q ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PS:3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE'>1PS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7d6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7d6q OCA], [https://pdbe.org/7d6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7d6q RCSB], [https://www.ebi.ac.uk/pdbsum/7d6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7d6q ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8XBV2_ECOLX Q8XBV2_ECOLX] The A subunit is responsible for inhibiting protein synthesis through the catalytic inactivation of 60S ribosomal subunits. After endocytosis, the A subunit is cleaved by furin in two fragments, A1 and A2: A1 is the catalytically active fragment, and A2 is essential for holotoxin assembly with the B subunits.[ARBA:ARBA00043904]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Shiga toxin (Stx) is a major virulence factor of enterohemorrhagic Escherichia coli, which causes fatal systemic complications. Here, we identified a tetravalent peptide that inhibited Stx by targeting its receptor-binding, B-subunit pentamer through a multivalent interaction. A monomeric peptide with the same motif, however, did not bind to the B-subunit pentamer. Instead, the monomer inhibited cytotoxicity with remarkable potency by binding to the catalytic A-subunit. An X-ray crystal structure analysis to 1.6 A resolution revealed that the monomeric peptide fully occupied the catalytic cavity, interacting with Glu167 and Arg170, both of which are essential for catalytic activity. Thus, the peptide motif demonstrated potent inhibition of two functionally distinct subunits of Stx.
 +
 +
Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin.,Watanabe-Takahashi M, Tamada M, Senda M, Hibino M, Shimizu E, Okuta A, Miyazawa A, Senda T, Nishikawa K Commun Biol. 2021 May 10;4(1):538. doi: 10.1038/s42003-021-02068-3. PMID:33972673<ref>PMID:33972673</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7d6q" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Shiga toxin 3D structures|Shiga toxin 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Z-disk]]
+
[[Category: Hibino M]]
 +
[[Category: Miyazawa A]]
 +
[[Category: Nishikawa K]]
 +
[[Category: Okuda A]]
 +
[[Category: Senda M]]
 +
[[Category: Senda T]]
 +
[[Category: Takahashi M]]
 +
[[Category: Tamada M]]

Current revision

Crystal structure of the Stx2a

PDB ID 7d6q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools