Sandbox Reserved 1674

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{{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
==CTX-M Beta-Lactamase==
==CTX-M Beta-Lactamase==
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<StructureSection load='7K2X' size='340' side='right' caption='Overall structure of CTX-M Beta-Lactamase without any important ligands. (PDB: 7K2X)' scene=''>
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CTX-M Beta Lactamase is a class A enzyme that creates drug resistance to ampicillin and cefotaxime through a two step process of deacylation and acylation.
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CTX-M Beta-Lactamase is an enzyme made to inhibit Beta-Lactam. It is found within the E.Coli bacteria and makes the bacteria drug resistant.
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== Function of your protein ==
== Function of your protein ==
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Beta- Lactam binds with<scene name='87/873236/Ampicillin/1'> ampicillin</scene>
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<StructureSection load='7K2X' size='340' side='right' caption='Overall structure of CTX-M Beta-Lactamase without any important ligands. (PDB: 7K2X)' scene=''>
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CTX-M Beta-Lactamase is an enzyme made to inhibit Beta-Lactam. It is found within bacteria, specifically the ''E. coli'' bacteria. Beta- Lactamase binds with <scene name='87/873236/Ampicillin/2'>ampicillin</scene> and <scene name='87/873236/Cefotaxime/3'>cefotaxime</scene>, both of which are types of drugs made to fight bacterial infections. Beta-Lactamase specifically attacks the lactam ring within both of these structures using a deacylation.
== Biological relevance and broader implications ==
== Biological relevance and broader implications ==
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This enzyme inhibits the drug's function by breaking apart the lactam ring. This is does cause drug resistance within the ''E. coli'' bacteria making it much harder to treat via drug therapies.
== Important amino acids==
== Important amino acids==
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The important amino acids within the CTX-M Beta Lactamase are Ser70, Ser130, Lys234, Arg234, and Lys73. This creates the catalytic <scene name='87/873236/Active_site_red/1'>triad</scene> with one proton shuttle. The residue at 234 does undergo a mutation in some cases and therefore can be either a Lys, or an Arg. The catalytic triad are the residues at 70, 130, and 234. The S130 helps to cleave the amide bond and distributes a proton to the nitrogen. S70 attacks the carbonyl carbon on the lactam ring before also protonating to create an alcohol and it breaks off again. K73 does work as a proton shuttle for both parts of the reaction.
== Structural highlights ==
== Structural highlights ==
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This protein has eight chains. <scene name='87/873236/Chain_a/1'>Each chain</scene> has eleven separate alpha helixes, and nine separate beta sheets. Some of the chains do bind to a GOL to help with stability. Within each chain, there are two of the catalytic amino acids within helix three. The last catalytic amino acid is located in helix seven. Both of those helices form important interactions with the ligands because of those catalytic amino acids, which have been highlighted <scene name='87/873236/Active_site_red/1'>here</scene>.
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This protein has eight chains. Each <scene name='87/873236/Secondary_structure/1'>chain</scene> has eleven separate alpha helixes, and nine separate beta sheets. Some of the chains do bind to a GOL to help with stability. Within each chain, there are two of the catalytic amino acids within helix three. The last catalytic amino acid is located in helix seven. Both of those helices form important interactions with the ligands because of those catalytic amino acids.
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The important<scene name='87/873236/Amino_acid_tert/1'> tertiary structure</scene> is how the protein folds to allow the amino acids in the catalytic triad to be near each other because in the sequence, the amino acids are not near each other. By folding, the protein is able to create the binding pocket that holds the catalytic amino acids that help Beta- Lactamase function normally.
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In the<scene name='87/873236/Space_fill/2'> space fill</scene> view of the enzyme, you can see the small binding pocket that is created to hold the substrate better.
== Other important features ==
== Other important features ==
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As previously mentioned, this enzyme does also utilize a <scene name='87/873236/Lysine_73/2'>lysine</scene> at residue 73. This is to help shuttle protons through the reaction. S170 uses it in the first part of the reaction and Glu166 is activated by this as well, and completes the reaction, as well as recreates the S170, by donating more protons. This can allow the enzyme to work multiple times and retain it's function overtime which is not good in regards to drug resistance.
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Another interesting feature is the K234 as it doesn't actually bond with the substrate like the S130, but instead works to lower the pKa of the S130, so that it is more likely to donate a proton.
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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</StructureSection>
</StructureSection>
== References ==
== References ==
<ref>PMID:33109613</ref>
<ref>PMID:33109613</ref>
<references/>
<references/>

Current revision

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
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CTX-M Beta-Lactamase

CTX-M Beta Lactamase is a class A enzyme that creates drug resistance to ampicillin and cefotaxime through a two step process of deacylation and acylation.

Function of your protein

Overall structure of CTX-M Beta-Lactamase without any important ligands. (PDB: 7K2X)

Drag the structure with the mouse to rotate

References

[1]

  1. Soeung V, Lu S, Hu L, Judge A, Sankaran B, Prasad BVV, Palzkill T. A drug-resistant beta-lactamase variant changes the conformation of its active-site proton shuttle to alter substrate specificity and inhibitor potency. J Biol Chem. 2020 Dec 25;295(52):18239-18255. doi: 10.1074/jbc.RA120.016103. Epub, 2020 Oct 26. PMID:33109613 doi:http://dx.doi.org/10.1074/jbc.RA120.016103
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