7emf

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(New page: '''Unreleased structure''' The entry 7emf is ON HOLD Authors: Xiaotong, Y., Jiabei, L., Zihan, W., Xizi, C., Xinxin, W., Yilun, Q., Weida, L., Yanhui, X. Description: Structure of the ...)
Current revision (05:44, 5 June 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7emf is ON HOLD
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==Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation==
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<StructureSection load='7emf' size='340' side='right'caption='[[7emf]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7emf]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EMF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7emf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7emf OCA], [https://pdbe.org/7emf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7emf RCSB], [https://www.ebi.ac.uk/pdbsum/7emf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7emf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MED1_HUMAN MED1_HUMAN] Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.<ref>PMID:9653119</ref> <ref>PMID:10406464</ref> <ref>PMID:12218053</ref> <ref>PMID:12037571</ref> <ref>PMID:11867769</ref> <ref>PMID:12556447</ref> <ref>PMID:14636573</ref> <ref>PMID:15471764</ref> <ref>PMID:15340084</ref> <ref>PMID:15989967</ref> <ref>PMID:16574658</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The 1.3-megadalton transcription factor IID (TFIID) is required for preinitiation complex (PIC) assembly and RNA polymerase II (Pol II)-mediated transcription initiation on almost all genes. The 26-subunit Mediator stimulates transcription and cyclin-dependent kinase 7 (CDK7)-mediated phosphorylation of the Pol II C-terminal domain (CTD). We determined the structures of human Mediator in the Tail module-extended (at near-atomic resolution) and Tail-bent conformations and structures of TFIID-based PIC-Mediator (76 polypeptides, ~4.1 megadaltons) in four distinct conformations. PIC-Mediator assembly induces concerted reorganization (Head-tilting and Middle-down) of Mediator and creates a Head-Middle sandwich, which stabilizes two CTD segments and brings CTD to CDK7 for phosphorylation; this suggests a CTD-gating mechanism favorable for phosphorylation. The TFIID-based PIC architecture modulates Mediator organization and TFIIH stabilization, underscoring the importance of TFIID in orchestrating PIC-Mediator assembly.
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Authors: Xiaotong, Y., Jiabei, L., Zihan, W., Xizi, C., Xinxin, W., Yilun, Q., Weida, L., Yanhui, X.
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Structures of the human Mediator and Mediator-bound preinitiation complex.,Chen X, Yin X, Li J, Wu Z, Qi Y, Wang X, Liu W, Xu Y Science. 2021 Jun 4;372(6546):eabg0635. doi: 10.1126/science.abg0635. Epub 2021 , May 6. PMID:33958484<ref>PMID:33958484</ref>
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Description: Structure of the human Mediator complex
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Weida, L]]
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<div class="pdbe-citations 7emf" style="background-color:#fffaf0;"></div>
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[[Category: Xiaotong, Y]]
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[[Category: Yilun, Q]]
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==See Also==
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[[Category: Yanhui, X]]
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*[[Mediator|Mediator]]
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[[Category: Xinxin, W]]
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== References ==
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[[Category: Jiabei, L]]
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<references/>
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[[Category: Xizi, C]]
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__TOC__
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[[Category: Zihan, W]]
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Li J]]
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[[Category: Liu W]]
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[[Category: Wu Z]]
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[[Category: Xu Y]]
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[[Category: Yin X]]

Current revision

Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation

PDB ID 7emf

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