7etk
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 7etk is ON HOLD Authors: Zhou, J.H., Wu, L. Description: The complex structure of FtmOx1 bond with fumitremorgen B at 1.22 angstrom [[Category: Unr...) |
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The complex structure of FtmOx1 bond with fumitremorgen B at 1.22 angstrom== |
| + | <StructureSection load='7etk' size='340' side='right'caption='[[7etk]], [[Resolution|resolution]] 1.22Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[7etk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_fumigatus Aspergillus fumigatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ETK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ETK FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2202743Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4Q1:FUMITREMORGEN+B'>4Q1</scene>, <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7etk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7etk OCA], [https://pdbe.org/7etk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7etk RCSB], [https://www.ebi.ac.uk/pdbsum/7etk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7etk ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/FTMF_ASPFU FTMF_ASPFU] Catalyzes the conversion of fumitremorgin B to verruculogen.<ref>PMID:19763315</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The 2-oxoglutarate (2OG)-dependent non-heme FtmOx1 catalyzes the endoperoxide biosynthesis of verruculogen. Although several mechanistic studies have been carried out, the catalytic mechanism of FtmOx1 is not well determined due to the lack of the reliable complex structure of FtmOx1 with fumitremorgin B. Here we provided the X-ray structure of the ternary complex FtmOx1*2OG*fumitremorgin B at resolution of 1.22 A. Our structures show that the binding of fumitremorgin B has induced the significant compression of the active pocket and Y68 in close proximity to C26 of the substrate. Further MD simulation and QM/MM calculations support the CarC-like mechanism proposed by Bollinger and coworkers, in which Y68 rather than Y224 acts as the H atom donor for quenching the C26-centered substrate radical. Our work is consistent with all available experimental data and highlights the importance of the accurate complex structure in mechanistic study of enzymatic catalysis. | ||
| - | + | Structural Insight into the Catalytic Mechanism of the Endoperoxide Synthase FtmOx1.,Zhou J, Wu L, Wang Z, Cen Y, Wang B Angew Chem Int Ed Engl. 2021 Nov 18. doi: 10.1002/anie.202112063. PMID:34796596<ref>PMID:34796596</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: Wu | + | <div class="pdbe-citations 7etk" style="background-color:#fffaf0;"></div> |
| - | [[Category: Zhou | + | == References == |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Aspergillus fumigatus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Wu L]] | ||
| + | [[Category: Zhou JH]] | ||
Current revision
The complex structure of FtmOx1 bond with fumitremorgen B at 1.22 angstrom
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