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| | ==The solution structure of NmPin, the parvuline of Nitrosopumilus maritimus== | | ==The solution structure of NmPin, the parvuline of Nitrosopumilus maritimus== |
| - | <StructureSection load='2m08' size='340' side='right'caption='[[2m08]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2m08' size='340' side='right'caption='[[2m08]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2m08]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Candidatus_nitrosopumilus_maritimus_scm1 Candidatus nitrosopumilus maritimus scm1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2M08 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2m08]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosopumilus_maritimus_SCM1 Nitrosopumilus maritimus SCM1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2M08 FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nmar0942, Nmar_0942 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=436308 Candidatus Nitrosopumilus maritimus SCM1])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2m08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m08 OCA], [https://pdbe.org/2m08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2m08 RCSB], [https://www.ebi.ac.uk/pdbsum/2m08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2m08 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2m08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m08 OCA], [https://pdbe.org/2m08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2m08 RCSB], [https://www.ebi.ac.uk/pdbsum/2m08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2m08 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A9A2C7_NITMS A9A2C7_NITMS] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Candidatus nitrosopumilus maritimus scm1]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bayer, P]] | + | [[Category: Nitrosopumilus maritimus SCM1]] |
| - | [[Category: Lederer, C]] | + | [[Category: Bayer P]] |
| - | [[Category: Archaeal]] | + | [[Category: Lederer C]] |
| - | [[Category: Isomerase]]
| + | |
| - | [[Category: Membrane]]
| + | |
| - | [[Category: Parvulin]]
| + | |
| - | [[Category: Sdpar]]
| + | |
| - | [[Category: Thaumarchaeota]]
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| Structural highlights
Function
A9A2C7_NITMS
Publication Abstract from PubMed
BACKGROUND: Peptidyl-prolyl isomerases (PPIases) are present in all forms of life and play a crucial role in protein folding and regulation. They catalyze the cis-trans isomerization of the peptide bond that precedes proline residues in numerous proteins. The parvulins, which is one family of PPIases, have been extensively investigated in several eukaryotes. However, nothing is known about their expression, function and localization in archaea. RESULTS: Here, we describe the endogenous expression, molecular structure, function and cellular localization of NmPin, a single-domain parvulin-type PPIase from Nitrosopumilus maritimus. This marine chemolithoautotrophic archaeon belongs to the globally abundant phylum Thaumarchaeota. Using high resolution NMR spectroscopy we demonstrate that the 3D structure of NmPin adopts a parvulin fold and confirmed its peptidyl-prolyl isomerase activity by protease-coupled assays and mutagenesis studies. A detailed topological analysis revealed a positively charged lysine-rich patch on the protein surface, which is conserved in all known parvulin sequences of thaumarchaeotes and targets NmPin to lipids in vitro. Immunofluorescence microscopy confirms that the protein is attached to the outer archaeal cell membrane in vivo. Transmission electron microscopy uncovered that NmPin has a uniform distribution at the membrane surface, which is correlated with a native cell shape of the prokaryote. CONCLUSION: We present a novel solution structure of a catalytically active thaumarchaeal parvulin. Our results reveal that a lysine-rich patch in NmPin mediates membrane localization. These findings provide a model whereby NmPin is located between the archaeal membrane and the surface layer and hence suggest proteins of the S-layer as the key target substrates of this parvulin.
NmPin from the marine thaumarchaeote Nitrosopumilus maritimus is an active membrane associated prolyl isomerase.,Hoppstock L, Trusch F, Lederer C, van West P, Koenneke M, Bayer P BMC Biol. 2016 Jun 27;14(1):53. doi: 10.1186/s12915-016-0274-1. PMID:27349962[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hoppstock L, Trusch F, Lederer C, van West P, Koenneke M, Bayer P. NmPin from the marine thaumarchaeote Nitrosopumilus maritimus is an active membrane associated prolyl isomerase. BMC Biol. 2016 Jun 27;14(1):53. doi: 10.1186/s12915-016-0274-1. PMID:27349962 doi:http://dx.doi.org/10.1186/s12915-016-0274-1
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