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| | ==Solution NMR structure of SLED domain of Scml2== | | ==Solution NMR structure of SLED domain of Scml2== |
| - | <StructureSection load='2mem' size='340' side='right'caption='[[2mem]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2mem' size='340' side='right'caption='[[2mem]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2mem]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MEM FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2mem]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MEM FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2biv|2biv]], [[2vyt|2vyt]], [[1oi1|1oi1]], [[4edu|4edu]]</div></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCML2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mem OCA], [https://pdbe.org/2mem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mem RCSB], [https://www.ebi.ac.uk/pdbsum/2mem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mem ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mem OCA], [https://pdbe.org/2mem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mem RCSB], [https://www.ebi.ac.uk/pdbsum/2mem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mem ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/SCML2_HUMAN SCML2_HUMAN]] Putative Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development (By similarity).
| + | [https://www.uniprot.org/uniprot/SCML2_HUMAN SCML2_HUMAN] Putative Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bezsonova, I]] | + | [[Category: Bezsonova I]] |
| - | [[Category: Pcg]]
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| - | [[Category: Prc1]]
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| - | [[Category: Transcription]]
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| Structural highlights
Function
SCML2_HUMAN Putative Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development (By similarity).
Publication Abstract from PubMed
Scml2 is a member of the Polycomb group of proteins involved in epigenetic gene silencing. Human Scml2 is a part of a multi-subunit protein complex, PRC1 (Polycomb Repressive Complex 1), which is responsible for maintenance of gene repression, prevention of chromatin remodeling, preservation of the stemness of the cell and cell differentiation. While the majority of PRC1 subunits have been recently characterized, the structure of Scml2 and its role in PRC1-mediated gene silencing remain unknown. We have identified a conserved protein domain within human Scml2 and determined its structure by solution NMR spectroscopy. We named this module Scm-Like Embedded Domain, or SLED. Evolutionarily, the SLED domain emerges in the first multicellular organisms, consistent with the role of Scml2 in cell differentiation. Furthermore, it is exclusively found within the Scm-like family of proteins, often accompanied by MBT and SAM domains. The domain adopts a novel alpha/beta fold with no structural analogues found in the Protein Data Bank. We also examined the ability of the SLED domain to bind double-stranded DNA, and show that the isolated domain interacts with DNA in a sequence-specific manner. Since PRC1 complexes localize to the promoters of a specific subset of developmental genes in vivo, the SLED domain of Scml2 may provide an important link connecting the PRC1 complexes to their target genes.
Solution NMR Structure of the DNA-binding Domain from Scml2 (Sex Comb on Midleg-like 2).,Bezsonova I J Biol Chem. 2014 Apr 10. PMID:24727478[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Bezsonova I. Solution NMR Structure of the DNA-binding Domain from Scml2 (Sex Comb on Midleg-like 2). J Biol Chem. 2014 Apr 10. PMID:24727478 doi:http://dx.doi.org/10.1074/jbc.M113.524009
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