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| <StructureSection load='6k1m' size='340' side='right'caption='[[6k1m]], [[Resolution|resolution]] 2.32Å' scene=''> | | <StructureSection load='6k1m' size='340' side='right'caption='[[6k1m]], [[Resolution|resolution]] 2.32Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6k1m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Strm5 Strm5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K1M FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6k1m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Stenotrophomonas_maltophilia_R551-3 Stenotrophomonas maltophilia R551-3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K1M FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.32Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Smal_0489 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=391008 STRM5])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cystathionine_gamma-lyase Cystathionine gamma-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.1 4.4.1.1] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k1m OCA], [https://pdbe.org/6k1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k1m RCSB], [https://www.ebi.ac.uk/pdbsum/6k1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k1m ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k1m OCA], [https://pdbe.org/6k1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k1m RCSB], [https://www.ebi.ac.uk/pdbsum/6k1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k1m ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/B4SII9_STRM5 B4SII9_STRM5] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Cystathionine gamma-lyase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Strm5]] | + | [[Category: Stenotrophomonas maltophilia R551-3]] |
- | [[Category: Chen, S]] | + | [[Category: Chen S]] |
- | [[Category: Wang, Y]] | + | [[Category: Wang Y]] |
- | [[Category: Biomineralization]]
| + | |
- | [[Category: Biosynthetic protein]]
| + | |
- | [[Category: Cd]]
| + | |
- | [[Category: Cgl]]
| + | |
- | [[Category: Cse]]
| + | |
- | [[Category: Lyase]]
| + | |
- | [[Category: Quantum dot]]
| + | |
| Structural highlights
Function
B4SII9_STRM5
Publication Abstract from PubMed
The development and utilization of inorganic material biosynthesis have evolved into single macromolecular systems. A putative cystathionine gamma-lyase of bacteria Stenotrophomonas maltophilia (smCSE) is a newly identified biomolecule that enables the synthesis of nanomaterials. Due to the lack of structural information, the mechanism of smCSE biosynthesis remains unclear. Herein, we obtain two atomic-resolution smCSE-form X-ray structures and confirm that the conformational changes of Tyr108 and Lys206 within the enzyme active sites are critical for the protein-driven synthesis of metal sulfide quantum dots (QDs). The structural stability of tetramer and the specificity of surface amino acids are the basis for smCSE to synthesize quantum dots. The size of QD products can be regulated by predesigned amino acids and the morphology can be controlled through proteolytic treatments. The growth rate is enhanced by the stabilization of a flexible loop in the active site, as shown by the X-ray structure of the engineered protein which fused with a dodecapeptide. We further prove that the smCSE-driven route can be applied to the general synthesis of other metal sulfide nanoparticles. These results provide a better understanding of the mechanism of QD biosynthesis and a new perspective on the control of this biosynthesis by protein modification.
Structural characterization of cystathionine gamma-lyase smCSE enables aqueous metal quantum dot biosynthesis.,Wang Y, Chen H, Huang Z, Yang M, Yu H, Peng M, Yang Z, Chen S Int J Biol Macromol. 2021 Mar 31;174:42-51. doi: 10.1016/j.ijbiomac.2021.01.141. , Epub 2021 Jan 23. PMID:33497694[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wang Y, Chen H, Huang Z, Yang M, Yu H, Peng M, Yang Z, Chen S. Structural characterization of cystathionine gamma-lyase smCSE enables aqueous metal quantum dot biosynthesis. Int J Biol Macromol. 2021 Mar 31;174:42-51. doi: 10.1016/j.ijbiomac.2021.01.141. , Epub 2021 Jan 23. PMID:33497694 doi:http://dx.doi.org/10.1016/j.ijbiomac.2021.01.141
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