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6ymd
From Proteopedia
(Difference between revisions)
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<StructureSection load='6ymd' size='340' side='right'caption='[[6ymd]], [[Resolution|resolution]] 1.25Å' scene=''> | <StructureSection load='6ymd' size='340' side='right'caption='[[6ymd]], [[Resolution|resolution]] 1.25Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6ymd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[6ymd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphanothece_halophytica Aphanothece halophytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YMD FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PMP:4-DEOXY-4-AMINOPYRIDOXAL-5-PHOSPHATE'>PMP</scene></td></tr> | |
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ymd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ymd OCA], [https://pdbe.org/6ymd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ymd RCSB], [https://www.ebi.ac.uk/pdbsum/6ymd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ymd ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ymd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ymd OCA], [https://pdbe.org/6ymd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ymd RCSB], [https://www.ebi.ac.uk/pdbsum/6ymd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ymd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/I7H6W6_APHHA I7H6W6_APHHA] Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.[HAMAP-Rule:MF_00051] | |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
| - | *[[Serine hydroxymethyltransferase|Serine hydroxymethyltransferase]] | + | *[[Serine hydroxymethyltransferase 3D structures|Serine hydroxymethyltransferase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Aphanothece halophytica]] |
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[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Angelaccio | + | [[Category: Angelaccio S]] |
| - | [[Category: Contestabile | + | [[Category: Contestabile R]] |
| - | [[Category: Nogues | + | [[Category: Nogues I]] |
| - | [[Category: Ruszkowski | + | [[Category: Ruszkowski M]] |
| - | [[Category: Sekula | + | [[Category: Sekula B]] |
| - | [[Category: Tramonti | + | [[Category: Tramonti A]] |
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Current revision
Crystal structure of serine hydroxymethyltransferase from Aphanothece halophytica in the covalent complex with malonate
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