6ze6

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<StructureSection load='6ze6' size='340' side='right'caption='[[6ze6]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
<StructureSection load='6ze6' size='340' side='right'caption='[[6ze6]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ze6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chatd Chatd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZE6 FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZE6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4NC:4-NITROCATECHOL'>4NC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FDA:DIHYDROFLAVINE-ADENINE+DINUCLEOTIDE'>FDA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6ze2|6ze2]], [[6ze3|6ze3]], [[6ze4|6ze4]], [[6ze5|6ze5]], [[6ze7|6ze7]], [[7aa2|7aa2]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4NC:4-NITROCATECHOL'>4NC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FDA:DIHYDROFLAVINE-ADENINE+DINUCLEOTIDE'>FDA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CTHT_0048040 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=759272 CHATD])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ze6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ze6 OCA], [https://pdbe.org/6ze6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ze6 RCSB], [https://www.ebi.ac.uk/pdbsum/6ze6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ze6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ze6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ze6 OCA], [https://pdbe.org/6ze6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ze6 RCSB], [https://www.ebi.ac.uk/pdbsum/6ze6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ze6 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The FAD-dependent oxidoreductase from Chaetomium thermophilum (CtFDO) is a novel thermostable glycoprotein from the glucose-methanol-choline (GMC) oxidoreductase superfamily. However, CtFDO shows no activity toward the typical substrates of the family and high-throughput screening with around 1000 compounds did not yield any strongly reacting substrate. Therefore, protein crystallography, including crystallographic fragment screening, with 42 fragments and 37 other compounds was used to describe the ligand-binding sites of CtFDO and to characterize the nature of its substrate. The structure of CtFDO reveals an unusually wide-open solvent-accessible active-site pocket with a unique His-Ser amino-acid pair putatively involved in enzyme catalysis. A series of six crystal structures of CtFDO complexes revealed five different subsites for the binding of aryl moieties inside the active-site pocket and conformational flexibility of the interacting amino acids when adapting to a particular ligand. The protein is capable of binding complex polyaromatic substrates of molecular weight greater than 500 Da.
 
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Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum.,Svecova L, Ostergaard LH, Skalova T, Schnorr KM, Koval' T, Kolenko P, Stransky J, Sedlak D, Duskova J, Trundova M, Hasek J, Dohnalek J Acta Crystallogr D Struct Biol. 2021 Jun 1;77(Pt 6):755-775. doi:, 10.1107/S2059798321003533. Epub 2021 May 14. PMID:34076590<ref>PMID:34076590</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6ze6" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Chatd]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Dohnalek, J]]
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[[Category: Dohnalek J]]
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[[Category: Kolenko, P]]
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[[Category: Kolenko P]]
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[[Category: Koval, T]]
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[[Category: Koval T]]
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[[Category: Oestergaard, L H]]
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[[Category: Oestergaard LH]]
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[[Category: Skalova, T]]
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[[Category: Skalova T]]
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[[Category: Svecova, L]]
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[[Category: Svecova L]]
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[[Category: 4-nitrocatechol]]
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[[Category: Chaetomium thermophilum]]
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[[Category: Fragment screening]]
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[[Category: Glucose-methanol-choline oxidoreductase]]
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[[Category: Oxidoreductase]]
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Current revision

FAD-dependent oxidoreductase from Chaetomium thermophilum in complex with fragment 4-nitrocatechol

PDB ID 6ze6

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