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2p72

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<StructureSection load='2p72' size='340' side='right'caption='[[2p72]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='2p72' size='340' side='right'caption='[[2p72]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorella_pbcv-1_virus Chlorella pbcv-1 virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_1 Paramecium bursaria Chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p6w|2p6w]], [[2p73|2p73]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">A64R ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q89399_PBCV1 Q89399_PBCV1]
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Paramecium bursaria chlorella virus-1 encodes at least five putative glycosyltransferases that are probably involved in the synthesis of the glycan components of the viral major capsid protein. The 1.6 A crystal structure of one of these glycosyltransferases (A64R) has a mixed alpha/beta fold containing a central, six-stranded beta sheet flanked by alpha helices. Crystal structures of A64R, complexed with UDP, CMP, or GDP, established that only UDP bound to A64R in the presence of Mn(2+), consistent with its high structural similarity to glycosyltransferases which utilize UDP as the sugar carrier. The structure of the complex of A64R, UDP-glucose, and Mn(2+) showed that the largest conformational change occurred when hydrogen bonds were formed with the ligands. Unlike UDP-glucose, UDP-galactose and UDP-GlcNAc did not bind to A64R, suggesting a selective binding of UDP-glucose. Thus, UDP-glucose is most likely the sugar donor for A64R, consistent with glucose occurring in the virus major capsid protein glycans.
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Structure and function of a chlorella virus-encoded glycosyltransferase.,Zhang Y, Xiang Y, Van Etten JL, Rossmann MG Structure. 2007 Sep;15(9):1031-9. PMID:17850743<ref>PMID:17850743</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2p72" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Chlorella pbcv-1 virus]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Etten, J L.Van]]
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[[Category: Paramecium bursaria Chlorella virus 1]]
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[[Category: Rossmann, M G]]
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[[Category: Rossmann MG]]
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[[Category: Xiang, Y]]
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[[Category: Van Etten JL]]
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[[Category: Zhang, Y]]
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[[Category: Xiang Y]]
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[[Category: Glycosyltransferase]]
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[[Category: Zhang Y]]
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[[Category: Pbcv-1]]
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[[Category: Transferase]]
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Current revision

crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1

PDB ID 2p72

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