Deaminase 3D structures
From Proteopedia
(Difference between revisions)
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**[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR /> | **[[4f3w]] – CDA – ''Mycobacterium marinum'' <BR /> | ||
**[[6kw6]] – CDA – ''Streptomyces noursei''<BR /> | **[[6kw6]] – CDA – ''Streptomyces noursei''<BR /> | ||
| + | **[[7zob]] – CDA – metagenome<BR /> | ||
*''Cytidine deaminase complex with nucleoside'' | *''Cytidine deaminase complex with nucleoside'' | ||
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*Cytosine deaminase | *Cytosine deaminase | ||
| - | **[[1rb7]], [[1uaq]] – yCDDA <BR /> | + | **[[1rb7]], [[1uaq]], [[8vlk]] – yCDDA <BR /> |
| - | **[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR /> | + | **[[1ysb]], [[1ysd]], [[8i3n]], [[8vll]], [[8vlm]] – yCDDA (mutant)<BR /> |
**[[1k6w]] – EcCDDA <BR /> | **[[1k6w]] – EcCDDA <BR /> | ||
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | **[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | ||
| + | |||
*''Cytosine deaminase complex'' | *''Cytosine deaminase complex'' | ||
| - | **[[1ox7]] – yCDDA + Zn <BR /> | + | **[[1ox7]], [[8vlj]] – yCDDA + Zn <BR /> |
| + | **[[8i3o]] – yCDDA (mutant) + Mn<BR /> | ||
**[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | **[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | ||
| - | **[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR /> | + | **[[2o3k]], [[8i3p]] – yCDDA (mutant) + pyrimidine derivative<BR /> |
**[[3r0d]] – EcCDDA + Zn <BR /> | **[[3r0d]] – EcCDDA + Zn <BR /> | ||
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | **[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | ||
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**[[2w4l]] – hDCMP<BR /> | **[[2w4l]] – hDCMP<BR /> | ||
| + | **[[88vl]] – hDCMP + HIV VIF + CBF-beta + EloB + EloC + RNA – Cryo EM<BR /> | ||
| + | **[[7uu3]], [[7uu4]], [[7uu5]], [[8edj]] – rmDCMP + RNA – rhesus monkey<BR /> | ||
| + | **[[8tvc]], [[8tx4]] – rmDCMP + DNA <BR /> | ||
| + | **[[8e40]] – rmDCMP + HIV VIF + CBF-beta + RNA – Cryo EM<BR /> | ||
**[[5jfy]] – DCMP - cabbage<BR /> | **[[5jfy]] – DCMP - cabbage<BR /> | ||
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | **[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | ||
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**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR /> | **[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR /> | ||
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR /> | **[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR /> | ||
| - | **[[4lc5]], [[4lcn]], [[4hrq]] – NeGDA + guanine derivative<BR /> | + | **[[4lc5]], [[4lcn]], [[4hrq]], [[7c3t]], [[7c3u]] – NeGDA + guanine derivative<BR /> |
**[[4hrw]] – NeGDA (mutant) + guanine derivative<BR /> | **[[4hrw]] – NeGDA (mutant) + guanine derivative<BR /> | ||
**[[4lco]] – NeGDA + ameline<BR /> | **[[4lco]] – NeGDA + ameline<BR /> | ||
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**[[4ld2]] – NeGDA + cytidine<BR /> | **[[4ld2]] – NeGDA + cytidine<BR /> | ||
**[[4ld4]] – NeGDA + cytosine<BR /> | **[[4ld4]] – NeGDA + cytosine<BR /> | ||
| + | |||
| + | *Guanosine deaminase | ||
| + | |||
| + | **[[7dbf]] – AtGSDA + Zn<br /> | ||
| + | **[[7dc9]] – AtGSDA + Zn + GMP<br /> | ||
| + | **[[7dca]] – AtGSDA + Zn + xanthosine<br /> | ||
| + | **[[7dcb]] – AtGSDA + Zn + inosine<br /> | ||
| + | **[[7dm6]] – AtGSDA + Zn + crotonoside<br /> | ||
| + | **[[7dcw]] – AtGSDA + Zn + adeosine<br /> | ||
| + | **[[7dgc]], [[7dh1]], [[7dlc]], [[7dm5]], [[7dox]], [[7dow]], [[7doy]], [[7dpk]] – AtGSDA + Zn + guanosine derivative<br /> | ||
| + | **[[7dqn]], [[7w1q]] – AtGSDA (mutant) + Zn + guanosine derivative<br /> | ||
*Adenine deaminase | *Adenine deaminase | ||
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**[[4r7t]] – VcGPD <br /> | **[[4r7t]] – VcGPD <br /> | ||
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR /> | **[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR /> | ||
| + | **[[7lqm]] – GPD – ''Pasteurelia multocida'' <BR /> | ||
| + | **[[7lqn]] – GPD –'' Haemophilus influenzae''<BR /> | ||
| + | **[[8eol]] – SdGPD – ''Shewanella denitrificans''<BR /> | ||
| + | **[[8eym]] – SdGPD + glucosamine-6-phosphate derivatives<BR /> | ||
| + | |||
*1-aminocyclopropane-1-carboxylate (ACC) deaminase | *1-aminocyclopropane-1-carboxylate (ACC) deaminase | ||
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**[[3iau]] – THD + PLP derivative – tomato<BR /> | **[[3iau]] – THD + PLP derivative – tomato<BR /> | ||
**[[1tdj]] – EcTHD + PLP <BR /> | **[[1tdj]] – EcTHD + PLP <BR /> | ||
| + | **[[8zkv]] – EcTHD (mutant) + PLP <BR /> | ||
| + | **[[9jfi]] – EcTHD + PLP derivative <BR /> | ||
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | **[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | ||
**[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | **[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | ||
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | **[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | ||
| + | **[[8y1j]] – THD + PLP derivative – ''Pseudomonas aeruginosa''<BR /> | ||
*L-serine deaminase | *L-serine deaminase | ||
Current revision
3D Structures of deaminase
Updated on 14-May-2025
