7eg3

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Current revision (16:53, 29 November 2023) (edit) (undo)
 
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==Crystal structure of the apoAequorin complex with (S)-HM-daCTZ==
==Crystal structure of the apoAequorin complex with (S)-HM-daCTZ==
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<StructureSection load='7eg3' size='340' side='right'caption='[[7eg3]]' scene=''>
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<StructureSection load='7eg3' size='340' side='right'caption='[[7eg3]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EG3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EG3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7eg3]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EG3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EG3 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eg3 OCA], [https://pdbe.org/7eg3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eg3 RCSB], [https://www.ebi.ac.uk/pdbsum/7eg3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eg3 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=J2U:(2~{S})-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-2,3-dihydroinden-1-one'>J2U</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eg3 OCA], [https://pdbe.org/7eg3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eg3 RCSB], [https://www.ebi.ac.uk/pdbsum/7eg3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eg3 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AEQ2_AEQVI AEQ2_AEQVI] Ca(2+)-dependent bioluminescence photoprotein. Displays an emission peak at 470 nm (blue light). Trace amounts of calcium ion trigger the intramolecular oxidation of the chromophore, coelenterazine into coelenteramide and CO(2) with the concomitant emission of light.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Ca2+-binding photoprotein aequorin is a complex of apoAequorin (apoprotein) and (S)-2-peroxycoelenterazine. Aequorin can be regenerated by the incubation of apoAequorin with coelenterazine and molecular oxygen (O2). In this study, to investigate the molecular recognition of apoAequorin for coelenterazine using chemical probes, the chiral deaza-analogs of (S)- and (R)-deaza-CTZ (daCTZ) for coelenterazine and of (S)-2- and (R)-2-hydroxymethyl-deaza-CTZ (HM-daCTZ) for 2-peroxycoelenterazine were efficiently prepared by the improvement method. The chiral deaza-analogs of (S)-daCTZ and (S)-HM-daCTZ selectively inhibited the regeneration step to aequorin by binding the catalytic site of coelenterazine in the apoAequorin molecule. The crystal structures of the apoAequorin complexes with (S)-daCTZ and (S)-HM-daCTZ were determined, suggesting that the hydroxy moiety at the C6-hydroxyphenyl group and the carbonyl moiety of the imidazopyrazinone ring in coelenterazine are essential to bind the apoAequorin molecule through hydrogen bonding. Therefore, the chiral deaza-analogs of coelenterazine can be used as a probe to study the interaction between coelenterazine and the related proteins including photoprotein, luciferase, and coelenterazine-binding protein.
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Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.,Inouye S, Sumida Y, Tomabechi Y, Taguchi J, Shirouzu M, Hosoya T PLoS One. 2021 Jun 11;16(6):e0251743. doi: 10.1371/journal.pone.0251743., eCollection 2021. PMID:34115795<ref>PMID:34115795</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7eg3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aequorea victoria]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Shirouzu M]]
[[Category: Shirouzu M]]
[[Category: Tomabechi Y]]
[[Category: Tomabechi Y]]

Current revision

Crystal structure of the apoAequorin complex with (S)-HM-daCTZ

PDB ID 7eg3

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