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DNA polymerase 3D structures

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Current revision (07:48, 16 February 2023) (edit) (undo)
 
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Line 13: Line 13:
**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br />
**[[5oxj]] – TaDpo I + DNA + GMP derivative + imidazole derivative<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
-
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo I + DNA – ''Pyrococcus abyssi''<br />
+
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – PaDpo I + DNA – ''Pyrococcus abyssi''<br />
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br />
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br />
-
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5s]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
+
**[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5q]], [[7k5s]], [[7k5t]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br />
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br />
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br />
-
**[[3eyz]] - GsDpo I (mutant) + DNA <br />
 
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
**[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br />
**[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
**[[6vdd]] - MsDpo I + DNA + nucleotide derivative <br />
 +
**[[7pbk]] – Dpo I – Vibrio phage<br />
 +
**[[7r0k]] – Dpo I – Thermus phage<br />
-
*DNA polymerase I klenow fragment
+
*DNA polymerase I klenow fragment or Taq polymerase
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[1qsl]] - EcDpo I + DNA<br />
**[[1qsl]] - EcDpo I + DNA<br />
 +
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I (mutant) + DNA<br />
**[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br />
**[[1kfd]], [[1dpi]] - EcDpo I + nucleotide<br />
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I + DNA + nucleotide<br />
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I + DNA + nucleotide<br />
 +
**[[2kfz]] - EcDpo I (mutant) + DNA + nucleotide<br />
**[[1ktq]] - TaDpo I <br />
**[[1ktq]] - TaDpo I <br />
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I + DNA<br />
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I + DNA<br />
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br />
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br />
 +
**[[3py8]] - TaDpo I (mutant) + DNA<br />
 +
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]], [[7owf]] - TaDpo I + DNA + nucleotide<br />
 +
**[[3rrg]], [[4n56]], [[4n5s]], [[4xiu]] - TaDpo I (mutant) + DNA + nucleotide<br />
 +
**[[1xwl]] - GsDpo I <br />
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br />
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
Line 42: Line 49:
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
-
**[[3o59]] - PhDpo II large subunit]] - ''Pyrococcus horikoshii''<br />
+
**[[3o59]], [[5bkh]] - PhDpo II large subunit - ''Pyrococcus horikoshii<''br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[2kxe]] - PhDpo II small subunit<br />
 +
**[[1qqc]] – DeDpo II – ''Desulfurococcus''<br />
**[[5ijl]] - PaDpo II large subunit <br />
**[[5ijl]] - PaDpo II large subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
**[[5ihe]] - PaDpo II small subunit <br />
Line 49: Line 57:
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br />
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br />
**[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br />
 +
**[[7rsr]], [[7rss]], [[7rsu]], [[7tqw]] - TkPol + purine derivative + DNA <br />
 +
**[[7om3]], [[7omb]], [[7omg]] - TkPol + DNA + nucleotide<br />
 +
**[[7e15]] - TkPol II small subunit + GINS51 + ssDNA-specific exonuclease<br />
-
*DNA polymerase III subunit α
+
*DNA polymerase III subunit alpha
-
**[[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br />
+
**[[2hnh]], [[2hqa]] - EcDpo III subunit alpha catalytic fragment<br />
-
**[[2hpi]], [[2hpm]] - TaDpo III α subunit<br />
+
**[[4jom]] - EcDpo III alpha subunit catalytic fragment (mutant)<br />
-
**[[3e0d]] - TaDpo III α subunit + DNA<br />
+
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III alpha (mutant) beta, epsilon subunits + DNA – Cryo EM<br />
-
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III α subunit + DNA + nucleotide <br />
+
-
**[[5m1s]], [[5fkw]], [[5fkv]], [[5fku]] - EcDpo III α(mutant)β,ε subunits + DNA – Cryo EM<br />
+
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
-
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III α subunit – ''Synechocystis''<br />
+
**[[2hpi]], [[2hpm]] - TaDpo III alpha subunit<br />
-
**[[4gig]] - SyDpo III α subunit (mutant) <br />
+
**[[3e0d]] - TaDpo III alpha subunit + DNA<br />
-
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III α subunit – ''Nostoc punctiforme''<br />
+
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III alpha subunit + DNA + nucleotide <br />
-
**[[4lx3]], [[4qfq]] - NpDpo III α subunit + nucleic acid binding tRNA/helicase<br />
+
**[[1zd7]], [[1zde]], [[3nzm]], [[5ol5]], [[5ol1]] - SyDpo III alpha subunit – Synechocystis<br />
-
**[[5lew]] - MtPol III α subunit – ''Mycobacterrium tuberculosis''<br />
+
**[[4gig]] - SyDpo III alpha subunit (mutant) <br />
 +
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III alpha subunit – Nostoc punctiforme<br />
 +
**[[4lx3]], [[4qfq]] - NpDpo III alpha subunit + nucleic acid binding tRNA/helicase<br />
 +
**[[5lew]] - MtPol III alpha subunit – Mycobacterrium tuberculosis<br />
 +
**[[7pu7]] - MtDpo III alpha subunit + DNA<br />
-
*DNA polymerase III subunit β or sliding clamp
+
*DNA polymerase III subunit beta or sliding clamp
-
**[[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit β<br />
+
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit beta<br />
-
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant) <br />
+
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit beta (mutant) <br />
-
**[[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br />
+
**[[3d1e]] - EcDpo III subunit beta + EcDpo II C-terminal<br />
-
**[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br />
+
**[[1unn]] - EcDpo III subunit beta + EcDpo IV little finger<br />
-
**[[4trt]] – DrDpo III β subunit – ''Deinococcus radiodurans''<br />
+
**[[2avt]] - Dpo III beta subunit – ''Streptococcus pyogenes''<br />
 +
**[[2awa]] - Dpo III beta subunit – ''Streptococcus pneumoniae''<br />
 +
**[[4trt]] – DrDpo III beta subunit – ''Deinococcus radiodurans''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
-
**[[1vpk]] - TmDpo III β subunit<br />
+
**[[1vpk]] - TmDpo III beta subunit<br />
-
**[[3t0p]] - Dpo III β subunit – ''Eubacterium rectale''<br />
+
**[[3t0p]] - Dpo III beta subunit – ''Eubacterium rectale''<br />
-
**[[6ap4]] - Dpo III β subunit – ''Acinetobacter baumannii''<br />
+
**[[6ap4]] - Dpo III beta subunit – ''Acinetobacter baumannii''<br />
-
**[[6amq]] - Dpo III β subunit – ''Enterobacter cloacae''<br />
+
**[[6amq]] - Dpo III beta subunit – ''Enterobacter cloacae''<br />
-
**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III β subunit – ''Caulobacter crescentus''<br />
+
**[[5wce]], [[6izo]], [[6jir]] - Dpo III beta subunit – ''Caulobacter crescentus''<br />
-
**[[5w7z]] - RcDpo III β subunit – ''Rickettsia conorii''<br />
+
**[[5w7z]] - RcDpo III beta subunit – ''Rickettsia conorii''<br />
-
**[[6man]] - Dpo III β subunit – ''Rickettsia bellii''<br />
+
**[[6man]] - Dpo III beta subunit – ''Rickettsia bellii''<br />
-
**[[6d46]] - RtDpo III β subunit – ''Rickettsia typhi''<br />
+
**[[6d46]] - RtDpo III beta subunit – ''Rickettsia typhi''<br />
-
**[[6dlk]] - Dpo III subunit – ''Rickettsia rickettsii''<br />
+
**[[6dlk]] - RrDpo III beta subunit – ''Rickettsia rickettsii''<br />
-
**[[6d47]] - Dpo III subunit – ''Mycobacterium marinum''<br />
+
**[[6d47]] - MmDpo III beta subunit – ''Mycobacterium marinum''<br />
-
**[[1jqj]], [[1jql]] - EcDpo III subunit β,γ(mutant) <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
-
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br />
+
**[[4tr6]] - Pol III beta subunit – Bacillus subtilis<br />
-
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III β subunit <br />
+
**[[3p16]], [[3rb9]], [[4tr7]] - MtPol III beta subunit <br />
-
**[[4tr8]], [[6ams]] - PsaPol III β subunit – ''Pseudomonas aeruginosa''<br />
+
**[[4tr8]], [[6ams]] - PsaPol III beta subunit –'' Pseudomonas aeruginosa''<br />
-
**[[6pth]] - PsaPol III β subunit + griselimycin<br />
+
**[[6pth]] - PsaPol III beta subunit + griselimycin<br />
-
**[[4s3i]], [[4rki]] - HpPol III β subunit – ''Helicobacter pylori''<br />
+
**[[4s3i]], [[4rki]] - HpPol III beta subunit – ''Helicobacter pylori''<br />
-
**[[6aig]] - Dpo III β subunit – ''Aeropyrum pernix''<br />
+
**[[6aig]] - Dpo III beta subunit – ''Aeropyrum pernix''<br />
-
**[[6deg]] - Dpo III subunit – ''Bartonella birtlesii''<br />
+
**[[6deg]] - BbDpo III beta subunit – ''Bartonella birtlesii''<br />
 +
**[[7rzm]] - Dpo III beta subunit – ''Stenotrophomonas maltophilia''<br />
 +
**[[8dt6]] - Dpo III beta subunit – ''Elizabethkingia anophelis''<br />
*DNA polymerase III subunit beta or sliding clamp complex
*DNA polymerase III subunit beta or sliding clamp complex
-
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit β + inhibitor<br />
+
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit beta + inhibitor<br />
-
**[[3bep]] - EcDpo III subunit β + DNA<br />
+
**[[3bep]] - EcDpo III subunit beta + DNA<br />
-
**[[5x06]] - EcDpo III subunit β + DnaA regulatory inactivator<br />
+
**[[5x06]] - EcDpo III subunit beta + DnaA regulatory inactivator<br />
-
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]] - EcDpo III β subunit + polypeptide<br />
+
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]], [[6fvl]], [[7az5]], [[7az6]], [[7az7]], [[7az8]], [[7azc]], [[7azd]], [[7aze]], [[7azf]], [[7azg]], [[7azk]], [[7azl]] - EcDpo III beta subunit + polypeptide<br />
-
**[[6fvm]] - EcDpo III β subunit (mutant) + P7 peptide<br />
+
**[[6fvm]] - EcDpo III beta subunit (mutant) + P7 peptide<br />
-
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III β subunit + NSAID drug <br />
+
**[[5g4q]], [[5g48]], [[5fxt]], [[5fve]] - HpPol III beta subunit + NSAID drug <br />
-
**[[5frq]] - HpPol III β subunit + DNA ligase peptide<br />
+
**[[5frq]] - HpPol III beta subunit + DNA ligase peptide<br />
-
**[[5dai]] - TkPol III β subunit + FEN-1 peptide - Thermococcus kodakarensis <br />
+
**[[5dai]] - TkPol III beta subunit + FEN-1 peptide <br />
-
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III β subunit + gricelimycin – Mycobacterium smegmatis<br />
+
**[[5ah4]], [[5ah2]], [[5agv]], [[5agu]] – MsPol III beta subunit + gricelimycin <br />
-
**[[6drt]] – T4Dpo III β subunit + polypeptide - Enterobacteria phage T4<br />
+
**[[6drt]] – T4Dpo III beta subunit + polypeptide - Enterobacteria phage T4<br />
-
**[[6dj8]] – Dpo III β subunit + polypeptide – Borrelia burgdorferi<br />
+
**[[6dj8]] – Dpo III beta subunit + polypeptide – ''Borrelia burgdorferi''<br />
-
**[[6fvo]], [[6fvn]] - MtPol III β subunit + P7 peptide<br />
+
**[[6fvo]], [[6fvn]] - MtPol III beta subunit + P7 peptide<br />
-
**[[6t7x]] - PaPol III β subunit <br />
+
**[[6t7x]] - PaPol III beta subunit <br />
-
**[[4tsz]], [[6t7y]] - PaPol III β subunit + peptide<br />
+
**[[4tsz]], [[6t7y]] - PaPol III beta subunit + peptide<br />
-
**[[6t8h]] - PaPol III β subunit + Dol II small subunit + DP2 – Cryo EM<br />
+
**[[6t8h]] - PaPol III beta subunit + Dol II small subunit + DP2 – Cryo EM<br />
-
**[[6djk]] - RtDpo III β subunit + polypeptide <br />
+
**[[6djk]] - RtDpo III beta subunit + polypeptide <br />
-
**[[6dm6]] - RcPol III β subunit + peptide<br />
+
**[[6dm6]] - RcPol III beta subunit + peptide<br />
 +
**[[6dly]] - MmPol III beta subunit + peptide<br />
 +
**[[6ptv]] - RrPol III beta subunit + griselimycin<br />
 +
**[[6ptr]] - BbPol III beta subunit + griselimycin<br />
-
*DNA polymerase III subunit γ
+
*DNA polymerase III subunit gamma
-
**[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br />
+
**[[5c51]], [[5c52]], [[5c53]] - hDpo III gamma subunit + DNA + nucleotide<br />
-
**[[2gno]] - TmDpo III γ subunit<br />
+
**[[1njf]], [[1njg]] - EcDpo III subunit gamma N-terminal domains 1-2<br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
+
**[[2gno]] - TmDpo III gamma subunit<br />
-
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
 +
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
-
*DNA polymerase III subunit δ
+
*DNA polymerase III subunit delta
-
**[[1a5t]] - EcDpo III subunit δ’ <br />
+
**[[1jqj]], [[1jql]] - EcDpo III subunit beta,delta(mutant) <br />
-
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
+
**[[1a5t]] - EcDpo III subunit delta’ <br />
-
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
+
**[[1xxh]], [[1jr3]] - EcDpo III subunit gamma, delta,delta’ <br />
-
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
+
**[[1xxi]] - EcDpo III subunit gamma, delta,delta’ + nucleotide<br />
-
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
+
**[[3glh]] - EcDpo III subunit delta,delta’,tau<br />
-
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
+
**[[3glf]] - EcDpo III subunitdelta,delta’,tau + DNA<br />
 +
**[[3gli]] - EcDpo III subunit delta,delta’,tau, zeta + DNA<br />
 +
**[[3glg]] - EcDpo III subunit delta,delta’,tau(mutant) + DNA<br />
-
*DNA polymerase III subunit ε
+
*DNA polymerase III subunit epsilon
-
**[[2gui]] – EcDpo III subunit ε N-terminal<br />
+
**[[2gui]] – EcDpo III subunit epsilon N-terminal<br />
-
**[[1j53]], [[1j54]] - EcDpo III subunit ε N-terminal exonuclease domain<br />
+
**[[1j53]], [[1j54]] - EcDpo III subunit epsilon N-terminal exonuclease domain<br />
-
**[[2ido]] - EcDpo III subunit ε + HOT protein<br />
+
**[[2ido]] - EcDpo III subunit epsilon+ HOT protein<br />
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
-
**[[2xy8]] - EcDpo III subunit ε,θ<br />
+
**[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br />
 +
**[[2xy8]] - EcDpo III subunit epsilon, theta<br />
-
*DNA polymerase III subunit τ
+
*DNA polymerase III subunit tau
-
**[[2aya]] - EcDpo III subunit τ <br />
+
**[[2aya]] - EcDpo III subunit tau<br />
-
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
+
**[[3glh]] - EcDpo III subunit delta, delta', tau<br />
-
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
+
**[[3glf]] - EcDpo III subunit delta, delta', tau DNA<br />
 +
**[[3glg]] - EcDpo III subunit delta, delta', tau (mutant) + DNA<br />
*DNA polymerase III subunit xi
*DNA polymerase III subunit xi
-
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
+
**[[3gli]] - EcDpo III subunit delta, delta', tau, xi + DNA<br />
-
*DNA polymerase III subunit θ
+
*DNA polymerase III subunit theta
-
**[[2xy8]] - EcDpo III subunit ε,θ<br />
+
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit theta - NMR<br />
-
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit θ - NMR<br />
+
-
*DNA polymerase III subunit χ
+
*DNA polymerase III subunit chi+phi
-
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
+
**[[1em8]] - EcDpo III subunit chi, phi<br />
-
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
+
**[[3sxu]] - EcDpo III subunit chi, phi + peptide<br />
-
 
+
-
*DNA polymerase III subunit φ
+
-
 
+
-
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
+
-
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
+
*DNA polymerase IV
*DNA polymerase IV
Line 166: Line 185:
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV <br />
**[[2rdi]] - SsPol IV <br />
-
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vgm]] - SsPol IV + DNA + nucleotide<br />
+
**[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vg6]], [[6vgm]], [[6vkp]], [[6vnp]], [[7kle]], [[7klf]] - SsPol IV + DNA + nucleotide<br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
-
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4tqr]], [[4tqs]] - SsPol IV + DNA + nucleotide<br />
+
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
-
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br />
+
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
Line 179: Line 197:
**[[6jus]] - MsPol IV + DNA + nucleotide<br />
**[[6jus]] - MsPol IV + DNA + nucleotide<br />
**[[6jur]] - MsPol IV (mutant) + DNA + nucleotide<br />
**[[6jur]] - MsPol IV (mutant) + DNA + nucleotide<br />
 +
 +
*DNA polymerase V
 +
 +
**[[8gmt]] - EcPol V subumit umud + RecA + DNA + nucleotide – Cryo EM<br />
*DNA polymerase from enterobacteria phage T7
*DNA polymerase from enterobacteria phage T7
-
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]], [[6n2w]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br />
+
**[[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA <br />
 +
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]], [[6n7w]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br />
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br />
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br />
 +
**[[6p7e]] - T7Dpo + thioredoxin + DNA + nucleotide + peptide<br />
**[[6n9x]], [[6n9w]], [[6n9v]] - T7Dpo + Gp4 + DNA + nucleotide derivative<br />
**[[6n9x]], [[6n9w]], [[6n9v]] - T7Dpo + Gp4 + DNA + nucleotide derivative<br />
**[[6n9u]] - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative<br />
**[[6n9u]] - T7Dpo + Gp4 + DNA + RNA + nucleotide derivative<br />
Line 196: Line 220:
**[[5mdn]] – Dpo – ''Pyrobaculum calidifontis''<br />
**[[5mdn]] – Dpo – ''Pyrobaculum calidifontis''<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
-
**[[1ih7]] – EpDpo]] - Enterobacteria phage RB69<br />
+
**[[1ih7]] – EpDpo - Enterobacteria phage RB69<br />
 +
**[[3cfo]], [[4i9l]] – EpDpo (mutant) <br />
**[[1waf]], [[1waj]] - EpDpo + nucleotide<br />
**[[1waf]], [[1waj]] - EpDpo + nucleotide<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
-
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[5gnq]] - EpDpo (mutant) + DNA + nucleotide<br />
+
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]], [[7f4y]] - EpDpo (mutant) + DNA + nucleotide<br />
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2atq]] – EpDpo + GP32<br />
**[[2atq]] – EpDpo + GP32<br />
-
**[[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br />
+
**[[1noy]] – T4Dpo + DNA <br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br />
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage 29<br />
Line 213: Line 238:
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[4ail]] – PfDpo + DNA<br />
**[[4ail]] – PfDpo + DNA<br />
-
**[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br />
+
**[[1tgo]], [[7b06]], [[7b07]], [[7b08]] - TgDpo – ''Thermococcus gorgonarius''<br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[7b0h]] – TgDpo + DNA <br />
**[[7b0h]] – TgDpo + DNA <br />
**[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br />
**[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br />
 +
**[[7b0f]], [[7b0g]] - TgDpo + DNA + nucleotide<br />
**[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br />
**[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br />
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br />
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br />
**[[6q4t]] - TkDpo (mutant) + DNA + nucleotide derivative<br />
-
**[[1qht]] - ThDpo (mutant) – ''Thermococcus''<br />
+
**[[1qht]] - ThDpo (mutant) – Thermococcus<br />
-
**[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br />
+
**[[4k8x]], [[5omv]], [[5omq]], [[6is7]], [[6isf]], [[6isg]], [[6ish]], [[6isi]] - ThDpo (mutant) + DNA<br />
-
**[[4yfu]] - Dpo (mutant) + DNA - ''Bacillus''<br />
+
**[[4yfu]] - Dpo (mutant) + DNA - Bacillus<br />
**[[1d5a]] – DeDpo <br />
**[[1d5a]] – DeDpo <br />
-
*DNA polymerase α
+
*DNA polymerase alpha
**[[4e2i]] – hDpo α subunit β + large T antigen – human<br />
**[[4e2i]] – hDpo α subunit β + large T antigen – human<br />
Line 234: Line 260:
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br />
**[[5exr]] - hDpo α catalytic+B subunits + DNA primase small+large subunits <br />
 +
**[[7opl]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + Nsp1 – Cryo EM<br />
 +
**[[7u5c]], [[8d08]] - hDpo α catalytic+B subunits + DNA primase small+large subunits + CST + DNA – Cryo EM<br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
-
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
+
**[[4qcl]], [[7n2m]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
-
**[[2keb]] - hDpo αB - NMR <br />
+
**[[2keb]] - hDpo alphaB - NMR <br />
-
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain – NMR<br />
+
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo alpha zinc finger domain – NMR<br />
 +
**[[7uy7]], [[7uy8]] - Dpo α B subunit + DNA primase small+large subunits – ''Tetrahymena thermophile'' - Cryo EM<br />
-
*DNA polymerase β
+
*DNA polymerase beta
-
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br />
+
**[[4ppx]] - hDpo + spiroiminohydantoin + DNA<br />
-
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo + DNA<br />
+
**[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo beta + DNA<br />
-
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn1]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo + DNA + nucleotide<br />
+
**[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[7mz0]], [[7mz1]], [[7mz2]], [[7mz3]], [[7mz4]], [[7mzb]], [[7rbe]], [[7rbf]], [[7rbg]], [[7rbh]], [[7rbi]], [[7rbj]], [[7rbk]], [[7rbl]], [[7rbm]], [[7rbn]], [[7rbo]], [[7s9j]], [[7s9k]], [[7s9l]], [[7s9m]], [[7s9n]], [[7s9o]], [[7a9p]], [[7s9q]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo beta + DNA + nucleotide<br />
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]],
**[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]],
-
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[7k96]] - hDpo + DNA + nucleotide analog<br />
+
[[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[6w2m]], [[7k96]] - hDpo beta + DNA + nucleotide analog<br />
-
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo β (mutant) + DNA + nucleotide analog<br />
+
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo beta (mutant) + DNA + nucleotide analog<br />
-
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo β (mutant) + DNA<br />
+
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo beta (mutant) + DNA<br />
-
**[[5hhi]], [[5hhh]] - hDpo β + DNA + azanide derivative<br />
+
**[[5hhi]], [[5hhh]] - hDpo beta + DNA + azanide derivative<br />
-
**[[2v6z]] - hDpo β N-terminal (mutant)]] - NMR<br />
+
**[[2v6z]] - hDpo beta N-terminal (mutant)]] - NMR<br />
-
**[[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br />
+
**[[3k75]], [[3lqc]] - hDpo beta + DNA repair protein XRCC1<br />
-
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo β – rat<br />
+
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo beta – rat<br />
-
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo β (mutant) <br />
+
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo beta (mutant) <br />
-
**[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br />
+
**[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo beta N-terminal – NMR<br />
-
**[[1nom]] - rDpo β C-terminal<br />
+
**[[1nom]] - rDpo beta C-terminal<br />
-
**[[1huo]], [[1huz]], [[3v7j]] - rDpo β + DNA<br />
+
**[[1huo]], [[1huz]], [[3v7j]] - rDpo beta + DNA<br />
-
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo β (mutant) + DNA <br />
+
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo beta (mutant) + DNA <br />
-
**[[1bpe]] - rDpo β + nucleotide<br />
+
**[[1bpe]] - rDpo beta + nucleotide<br />
-
**[[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br />
+
**[[2bpf]], [[2bpg]] - rDpo beta + DNA + nucleotide<br />
 +
**[[8e10]] - mDpo beta<br />
 +
**[[8e11]] - mDpo beta (mutant)<br />
**[[3au2]] – TtDpo β + GTP – ''Thermus thermophilus''<br />
**[[3au2]] – TtDpo β + GTP – ''Thermus thermophilus''<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
-
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />β
+
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
-
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br />
+
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo + DNA + nucleotide – ''Leishmania infantum''<br />
-
*DNA polymerase γ
+
*DNA polymerase beta-like protein
-
**[[3ikm]] - hDpo γ1+ γ2 <br />
+
**[[5hrb]], [[5hrd]], [[5hre]], [[7cpw]] - AsfvDpo + DNA – African swine fever virus<br />
-
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
+
**[[5hr9]], [[5hrg]] - AsfvDpo (mutant) + DNA <br />
-
**[[2jw5]] - hDpo λ BRCT domain<br />
+
**[[1jaj]] - AsfvDpo - NMR <br />
-
**[[1xsl]] - hDpo λ catalytic domain<br />
+
**[[5hrf]], [[5hri]], [[5hrl]] - AsfvDpo + DNA + nucleotide<br />
-
**[[1nzp]] - hDpo λ lyase domain - NMR<br />
+
**[[5hrh]], [[5hrk]] - AsfvDpo (mutant) + DNA + nucleotide<br />
-
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo λ + DNA<br />
+
-
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo λ (mutant) + DNA<br />
+
-
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo λ + DNA + nucleotide<br />
+
-
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo λ + DNA + nucleotide analog<br />
+
-
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
+
-
*DNA polymerase δ
+
*DNA polymerase gamma
-
**[[3e0j]] - hDpo δ2+ δ3<br />
+
**[[3ikm]] - hDpo gamma1+gamma2 <br />
 +
**[[3ikl]], [[2g4c]] - hDpo gamma2<br />
 +
**[[2jw5]] - hDpo gamma BRCT domain<br />
 +
**[[1xsl]] - hDpo gamma catalytic domain<br />
 +
**[[1nzp]] - hDpo gamma lyase domain - NMR<br />
 +
**[[3pmn]], [[3pnc]], [[3mda]], [[2gws]], [[2bcq]], [[2bcr]], [[2bcs]], [[2bcu]], [[2bcv]], [[1xsp]], [[1rzt]] - hDpo gamma + DNA<br />
 +
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo gamma (mutant) + DNA<br />
 +
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo gamma + DNA + nucleotide<br />
 +
**[[5c53]], [[5c52]], [[5c51]] - hDpo gamma1 + DNA + nucleotide + pyrimidine derivative<br />
 +
**[[4ztz]], [[4ztu]] - hDpo gamma1, gamma2 + DNA + nucleotide <br />
 +
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo gamma + DNA + nucleotide analog<br />
 +
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo gamma (mutant) + DNA + nucleotide<br />
 +
 
 +
*DNA polymerase delta
 +
 
 +
**[[3e0j]] - hDpo delta2+delta3<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
Line 286: Line 327:
**[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br />
**[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br />
-
*DNA polymerase ε
+
*DNA polymerase epsilon
-
**[[5vbn]] - hDpo ε subunits A+2 <br />
+
**[[5vbn]] - hDpo epsilon subunits A+2 <br />
-
*DNA polymerase ζ
+
*DNA polymerase zeta
-
**[[3abd]], [[3abe]] - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br />
+
**[[3abd]], [[3abe]] - hDpo zeta catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br />
-
**[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo ζ catalytic subunit + MAD2B<br />
+
**[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo zeta catalytic subunit + MAD2B<br />
-
**[[3vu7]], [[4gk0]], [[6ws0]] - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
+
**[[3vu7]], [[4gk0]], [[6ws0]] - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
-
**[[6ws5]] - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor<br />
+
**[[6ws5]] - hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor<br />
-
**[[4fjo]], [[4gk5]] - hDpo κ + hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
+
**[[4fjo]], [[4gk5]] - hDpo kappa + hDpo zeta catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
-
**[[6v8p]] - hDpo ζ catalytic subunit + hDpo d subunits 3+small – Cryo EM<br />
+
**[[6v8p]] - hDpo zeta catalytic subunit + hDpo d subunits 3+small – Cryo EM<br />
-
**[[6v93]] - hDpo ζ catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM<br />
+
**[[6v93]] - hDpo zeta catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM<br />
-
*DNA polymerase η
+
*DNA polymerase eta
-
**[[2i5o]] - hDpo η ubiquitin-binding zinc finger – NMR<br />
+
**[[2i5o]] - hDpo eta ubiquitin-binding zinc finger – NMR<br />
-
**[[2lsj]], [[2lsi]] - hDpo η + DNA repair protein Rev1<br />
+
**[[3wup]] - hDpo eta ubiquitin-binding zinc finger <br />
-
**[[6mp3]] - hDpo η + DNA <br />
+
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]], [[6mp3]] - hDpo eta + DNA <br />
-
**[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6wk6]] - hDpo η + DNA + nucleotide<br />
+
**[[3jaa]], [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6w5x]], [[6wk6]], [[7l69]], [[7lcd]], [[7m7l]], [[7m7m]], [[7m7n]], [[7m7o]], [[7m7p]], [[7m7q]], [[7m7r]], [[7m7s]], [[7m7t]], [[7m7u]], [[7m7y]], [[7m7z]], [[7m80]], [[7m81]], [[7m82]], [[7m83]], [[7m84]], [[7m85]], [[7m86]], [[7m87]], [[7m88]], [[7m89]], [[7m8a]], [[7m8b]], [[7m8c]], [[7m8d]], [[7u72]], [[7u73]], [[7u74]], [[7u75]], [[7u76]], [[7u77]], [[7u78]], [[7u79]], [[7u7a]], [[7u7b]], [[7u7c]], [[7u7d]], [[7u7e]], [[7u7g]], [[7u7f]], [[7u7i]], [[7u7j]], [[7u7k]], [[7u7l]], [[7u7r]], [[7u7s]], [[7u7t]], [[7u7u]], [[7u7v]], [[7u7w]], [[7u7x]], [[7u7y]], [[7u7z]], [[7u80]], [[7u81]], [[7u82]], [[7u83]], [[7u84]], [[8e85]], [[8e86]], [[8e87]], [[8e88]], [[8e89]], [[8e8a]], [[8e8c]], [[8e8d]], [[8e8e]], [[8e8f]], [[8e8g]], [[8e8h]], [[8e8j]], [[8e8k]] - hDpo eta + DNA + nucleotide<br />
-
**[[6pz3]], [[6q02]] - hDpo η (mutant) + DNA + nucleotide<br />
+
**[[6pz3]], [[6q02]] - hDpo eta (mutant) + DNA + nucleotide<br />
 +
**[[5aga]] - hDpo eta + nucleotide<br />
-
**[[5aga]] - hDpo η + nucleotide<br />
+
*DNA polymerase iota
-
*DNA polymerase ι
+
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo iota + DNA + nucleotide<br />
 +
**[[3ngd]], [[3osn]], [[3h40]] - hDpo iota catalytic fragment + DNA <br />
 +
**[[2ktf]] - hDpo iota + ubiquitin<br />
 +
**[[2l0f]], [[2l0g]] - hDpo iota + ubiquitin – NMR<br />
 +
**[[2khu]] - hDpo iota ubiquitin binding motif – NMR<br />
 +
**[[2khw]] - hDpoiota ubiquitin binding motif + ubiquitin – NMR<br />
 +
**[[2kwu]], [[2kwv]] - mDpo iota C-terminal + ubiquitin - NMR<br />
 +
**[[3ai4]] - mDpo iota/yEGFP<br />
-
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]], [[5ulx]], [[5ulw]], [[5kt7]], [[5kt6]], [[5kt5]], [[5kt4]], [[5kt3]], [[5kt2]] - hDpo ι + DNA + nucleotide<br />
+
*DNA polymerase kappa
-
**[[3ngd]], [[3osn]], [[3h40]], [[5ulx]], [[5ulw]] - hDpo ι catalytic fragment + DNA <br />
+
-
**[[2ktf]] - hDpo ι + ubiquitin<br />
+
-
**[[2l0f]], [[2l0g]] - hDpo ι + ubiquitin – NMR<br />
+
-
**[[2khu]] - hDpo ι ubiquitin binding motif – NMR<br />
+
-
**[[2khw]] - hDpo ι ubiquitin binding motif + ubiquitin – NMR<br />
+
-
**[[2kwu]], [[2kwv]] - mDpo ι C-terminal + ubiquitin - NMR<br />
+
-
**[[3ai4]] - mDpo ι/yEGFP<br />
+
-
*DNA polymerase κ
+
**[[1t94]] - hDpo kappa<br />
 +
**[[3in5]], [[5w2c]], [[5w2a]], [[5t14]] - hDpo kappa + DNA<br />
 +
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[4u6p]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo kappa + DNA + nucleotide<br />
 +
**[[7nv0]], [[7nv1]] - hDpo kappa + PCNA + DNA + nucleotide<br />
 +
**[[4u7c]], [[4y6p]] - hDpo kappa + DNA + benzopyrene derivative<br />
 +
**[[2lsi]] - hDpo kappa peptide + hRev1<br />
 +
**[[2lsk]] - mDpo kappa + DNA repair protein Rev1<br />
-
**[[1t94]] - hDpo κ<br />
+
*DNA polymerase lambda
-
**[[3in5]] - hDpo κ + DNA<br />
+
-
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]], [[6cst]], [[6bs1]], [[6brx]], [[5w2a]], [[5w2c]] - hDpo κ + DNA + nucleotide<br />
+
-
**[[2lsi]] - hDpo κ peptide + hRev1<br />
+
-
**[[2lsk]] - mDpo κ + DNA repair protein Rev1<br />
+
-
 
+
-
*DNA polymerase λ
+
**[[5cb1]] – hDpo <br />
**[[5cb1]] – hDpo <br />
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br />
**[[5iio]], [[5iin]], [[5iim]], [[5iil]], [[5iik]], [[5iij]], [[5iii]], [[5ddm]] – hDpo + DNA<br />
**[[5cp2]] – hDpo (mutant) + DNA<br />
**[[5cp2]] – hDpo (mutant) + DNA<br />
-
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]] – hDpo + DNA + nucleotide<br />
+
**[[5dkw]], [[5ca7]], [[4xus]], [[4xrh]], [[4xq8]], [[4xa5]], [[4x5v]], [[7m07]], [[7m08]], [[7m09]], [[7m0a]], [[7m0b]], [[7m0c]], [[7m0d]], [[7m0e]] – hDpo + DNA + nucleotide<br />
-
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]] – hDpo (mutant) + DNA + nucleotide<br />
+
**[[5cwr]], [[5cr0]], [[5cj7]], [[5chg]], [[7m43]], [[7m44]], [[7m45]], [[7m46]], [[7m47]], [[7m48]], [[7m49]], [[7m4a]], [[7m4b]], [[7m4c]], [[7m4d]], [[7m4e]], [[7m4f]], [[7m4h]], [[7m4i]], [[7m4j]], [[7m4k]], [[7m4l]] – hDpo (mutant) + DNA + nucleotide<br />
**[[5ddy]] – hDpo + nucleotide<br />
**[[5ddy]] – hDpo + nucleotide<br />
-
*DNA polymerase μ
+
*DNA polymerase mu or DNA-directed DNA/RNA polymerase
-
**[[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br />
+
**[[2htf]], [[2dun]] - hDpo mu BRCT domain residues 24-143 – NMR<br />
-
**[[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]] - hDpo residues 132-494 + DNA <br />
+
**[[4lzd]] - hDpo mu residues 132-494 <br />
-
**[[4yd2]], [[4ycx]] - hDpo μ residues 132-494 (mutant) + DNA <br />
+
**[[4lzg]], [[5tyz]], [[5tyy]], [[5tyx]], [[5tyw]], [[5tyv]], [[5tyu]], [[5tyg]], [[5tyf]], [[5tye]], [[5tyd]], [[5tyc]], [[5tyb]], [[5txz]], [[5txx]], [[5tws]], [[5twr]], [[5twq]], [[5twp]], [[5zlc]] - hDpo mu residues 132-494 + DNA <br />
-
**[[6ak5]] - hDpo μ residues 132-397+411-494 + nucleotide derivative<br />
+
**[[4yd2]], [[4ycx]] - hDpo mu residues 132-494 (mutant) + DNA <br />
-
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo μ residues 132-397+411-494 (mutant) + nucleotide derivative<br />
+
**[[6ak5]] - hDpo mu residues 132-397+411-494 + nucleotide derivative<br />
-
**[[7coa]] - hDpo μ + DNA + nucleotide derivative<br />
+
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo mu residues 132-397+411-494 (mutant) + nucleotide derivative<br />
-
**[[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]] - hDpo μ residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br />
+
**[[6vez]], [[6vf0]], [[6vf1]], [[6vf2]], [[6vf3]], [[6vf4]], [[6vf5]], [[6vf6]], [[6vf7]], [[6vf8]], [[6vf9]], [[6vfa]], [[6vfb]], [[6vfc]], [[7co6]], [[7co8]], [[7co9]], [[7coa]], [[7cob]], [[7cod]], [[7kss]], [[7kst]], [[7ksu]], [[7ksv]], [[7ksw]], [[7ksx]], [[7ksy]], [[7ksz]], [[7kt0]], [[7kt1]], [[7kt2]], [[7kt3]], [[7kt4]], [[7kt5]], [[7kt6]], [[7kt7]], [[7kt9]], [[7kta]], [[7ktb]], [[7ktc]], [[7ktd]], [[7kte]], [[7ktf]], [[7ktg]], [[7kth]], [[7kti]], [[7ktj]], [[7ktk]], [[7ktl]], [[7ktm]], [[7ktn]] - hDpo mu + DNA + nucleotide derivative<br />
-
**[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br />
+
**[[4m04]], [[4m0a]], [[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]], [[7coc]] - hDpo mu residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br />
 +
**[[2ihm]] - mDpo mu catalytic domain + DNA – mouse<br />
-
*DNA polymerase ν
+
*DNA polymerase nu
-
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo ν catalytic domain + DNA<br />
+
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo nu catalytic domain + DNA<br />
-
*DNA polymerase χ or repair DNA polymerase chi
+
*DNA polymerase chi or repair DNA polymerase chi
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
Line 361: Line 404:
**[[2w9m]] – DrDpo X
**[[2w9m]] – DrDpo X
-
*DNA polymerase θ
+
*DNA polymerase theta
**[[5a9j]] – hDpo helicase domain 1-894<br />
**[[5a9j]] – hDpo helicase domain 1-894<br />
**[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br />
**[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br />
**[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br />
**[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br />
-
**[[6xbu]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br />
+
**[[6xbu]], [[7zus]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br />
 +
**[[7zx0]], [[7zx1]], [[8e23]], [[8e24]] – hDpo polymerase domain + inhibitor + DNA<br />
 +
**[[8ef9]], [[8efc]], [[8efk]] – Dpo polymerase domain + nucleotide + DNA – Lates calcarifer<br />
*DNA polymerase from yeast
*DNA polymerase from yeast
-
**[[3oiq]] - yDpo α + cell division control protein 13 <br />
+
**[[3oiq]] - yDpo alpha + cell division control protein 13 <br />
-
**[[3flo]], [[3lgb]] - yDpo α subunits A,B<br />
+
**[[3flo]], [[3lgb]] - yDpo alpha subunits A,B<br />
-
**[[4b08]], [[4fvm]] - yDpo α subunit A<br />
+
**[[4b08]], [[4fvm]] - yDpo alpha subunit A<br />
-
**[[4fxd]], [[4fyd]] - yDpo α subunit A + RNA + DNA<br />
+
**[[4fxd]], [[4fyd]] - yDpo alpha subunit A + RNA + DNA<br />
-
**[[5oki]] - yDpo α subunit A + DCC1 + chromosome fidelity protein<br />
+
**[[5oki]] - yDpo alpha subunit A + DCC1 + chromosome fidelity protein<br />
-
**[[3iay]] - yDpo δ catalytic subunit + DNA<br />
+
**[[3iay]] - yDpo delta catalytic subunit + DNA<br />
-
**[[6p1h]] - yDpo δ catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />
+
**[[6p1h]] - yDpo delta catalytic+small+3 subunits + DNA + nucleotide – Cryo EM<br />
-
**[[6wjv]] - yDpo II ε – Cryo EM<br />
+
**[[6wjv]] - yDpo II epsilon – Cryo EM<br />
-
**[[6hv8]] - yDpo II ε subunit A+B – Cryo EM<br />
+
**[[6hv8]] - yDpo II epsilon subunit A+B – Cryo EM<br />
-
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br />
+
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo epsilon (mutant) + DNA<br />
-
**[[6i8a]], [[6qib]] - yDpo II ε subunit A + DNA + nucleotide <br />
+
**[[6i8a]], [[6qib]], [[7r3x]], [[7r3y]] - yDpo II epsilon subunit A + DNA + nucleotide <br />
-
**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II ε subunit A (mutant) + DNA + nucleotide derivative<br />
+
**[[6g0a]], [[6fwk]], [[3mfi]], [[4m8o]] - yDpo II epsilon subunit A (mutant) + DNA + nucleotide derivative<br />
-
**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II ε subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br />
+
**[[6s1c]], [[6s2e]], [[6s2f]] - yDpo II epsilon subunit A (mutant) + DCC1 + chromosome transmission fidelity proteins<br />
-
**[[6i8a]], [[6qib]] - yDpo II ε subunit A + DNA + nucleotide <br />
+
**[[6hv9]] - yDpo II epsilon subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />
-
**[[3mfi]], [[4m8o]] - yDpo ε (mutant) + DNA + nucleotide <br />
+
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo epsilon catalytic domain + DNA + nucleotide <br />
-
**[[6hv9]] - yDpo II ε subunit A+B + CMG + DNA + nucleotide – Cryo EM<br />
+
**[[6h1v]] - yDpo epsilon catalytic domain (mutant) + DNA + nucleotide <br />
-
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo ε catalytic domain + DNA + nucleotide <br />
+
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo epsilon + DNA<br />
-
**[[6h1v]] - yDpo ε catalytic domain (mutant) + DNA + nucleotide <br />
+
**[[7lxd]] - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM<br />
-
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br />
+
**[[7s0t]] - yDpo eta catalytic+processivity subunits + hDpo d subunits 3+small + DNA – Cryo EM<br />
-
**[[7lxd]] - yDpo ζ catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM<br />
+
**[[5y27]], [[5y26]] - Dpo epsilon subunit D + transcription factor – fission yeast<br />
-
**[[5y27]], [[5y26]] - Dpo ε subunit D + transcription factor – fission yeast<br />
+
**[[1jih]], [[5vtp]] – yDpo catalytic domain<br />
-
**[[1jih]], [[5vtp]] – yDpo η catalytic domain<br />
+
-
*DNA polymerase Rev1
+
*DNA polymerase Rev1; Domains – BRCT 44-133; catalytic 330-833; UBM2 998-1040; C-terminal 1158-1251
-
**[[3gqc ]] – hRev1 + DNA + nucleotide<br />
+
**[[3gqc]] – hRev1 catalytic domain + DNA + nucleotide<br />
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
-
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
+
**[[6axd]] – hRev1 UBM2 domain – NMR<br />
-
**[[2lsi]] - hDpo peptide + hRev1<br />
+
**[[6asr]] – hRev1 UBM2 domain + ubiquitin<br />
-
**[[4fjo]], [[4gk5]] - hDpo + hDpo  catalytic subunit + Rev1 + MAD2B<br />
+
**[[5vzm]] – hRev1 UBM2 domain + ubiquitin - NMR<br />
-
**[[2lsj]], [[2lsi]] - hDpo  + Rev1<br />
+
**[[2lsg]], [[2lsy]] – hRev1 C-terminal domain – NMR<br />
-
**[[2lsk]] - mDpo  + Rev1<br />
+
**[[2n1g]] – hRev1 C-terminal domain + Dpo d subunit 3 – NMR<br />
 +
**[[2lsi]] – hRev1 C-terminal domain + hDpo kappa peptide <br />
 +
**[[2lsk]] – hRev1 C-terminal domain + hDpo kappa peptide <br />
 +
**[[4ext]] – hRev1 C-terminal domain + hDpo eta catalytic subunit peptide + MAD2B<br />
 +
**[[4gk5]] – hRev1 C-terminal domain + hDpo kappa peptide + hDpo eta catalytic subunit peptide + MAD2B<br />
 +
**[[2lsj]] – mRev1 C-terminal domain + mDpo kappa peptide <br />
 +
**[[4fjo]] – mRev1 C-terminal domain + mDpo kappa peptide + MAD2B<br />
 +
**[[4id3]], [[5umv]] – yRev1 BRCT domain <br />
 +
**[[2m2i]], [[5vx7]] – yRev1 BRCT domain – NMR<br />
 +
**[[6x70]], [[6x72]], [[6x73]], [[6x74]], [[6x76]] – yRev1 catalytic domain + DNA <br />
 +
**[[3bjy]], [[2aq4]], [[3osp]], [[5wm1]], [[5wm8]], [[5wmb]], [[6x6z]], [[6x71]], [[6x75]], [[6x77]] – yRev1 catalytic domain + DNA + nucleotide<br />
*Terminal deoxynucleotidyl transferase
*Terminal deoxynucleotidyl transferase
Line 420: Line 474:
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / >
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / >
-
Terminal deoxynucleotidyl transferase ternary complex with DNA
+
*Terminal deoxynucleotidyl transferase ternary complex with DNA
**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / >
**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / >
Line 430: Line 484:
}}
}}
 +
 +
[[Category:Topic Page]]

Current revision

3D Structures of DNA polymerase

Updated on 16-February-2023

6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 6w2m, 7k96 - hDpo beta + DNA + nucleotide analog

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Michal Harel, Joel L. Sussman

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