2rv4

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==Solution structures of the DNA-binding domain (ZF5) of mouse immune-related zinc-finger protein ZFAT==
==Solution structures of the DNA-binding domain (ZF5) of mouse immune-related zinc-finger protein ZFAT==
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<StructureSection load='2rv4' size='340' side='right'caption='[[2rv4]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='2rv4' size='340' side='right'caption='[[2rv4]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2rv4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RV4 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2rv4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RV4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2elw|2elw]], [[2rut|2rut]], [[2ruu|2ruu]], [[2ruv|2ruv]], [[2ruw|2ruw]], [[2rux|2rux]], [[2ruy|2ruy]], [[2ruz|2ruz]], [[2rv0|2rv0]], [[2rv1|2rv1]], [[2rv2|2rv2]], [[2rv3|2rv3]], [[2rv5|2rv5]], [[2rv6|2rv6]], [[2rv7|2rv7]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Zfat, Gm922, Zfat1, Zfp406, Znf406 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rv4 OCA], [https://pdbe.org/2rv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rv4 RCSB], [https://www.ebi.ac.uk/pdbsum/2rv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rv4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rv4 OCA], [https://pdbe.org/2rv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rv4 RCSB], [https://www.ebi.ac.uk/pdbsum/2rv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rv4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/ZFAT_MOUSE ZFAT_MOUSE]] May be involved in transcriptional regulation. Overexpression causes down-regulation of a number of genes involved in the immune response. Some genes are also up-regulated.<ref>PMID:18329245</ref>
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[https://www.uniprot.org/uniprot/ZFAT_MOUSE ZFAT_MOUSE] May be involved in transcriptional regulation. Overexpression causes down-regulation of a number of genes involved in the immune response. Some genes are also up-regulated.<ref>PMID:18329245</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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ZFAT is a transcriptional regulator, containing eighteen C2H2-type zinc-fingers and one AT-hook, involved in autoimmune thyroid disease, apoptosis, and immune-related cell survival. We determined the solution structures of the thirteen individual ZFAT zinc-fingers (ZF) and the tandemly arrayed zinc-fingers in the regions from ZF2 to ZF5, by NMR spectroscopy. ZFAT has eight uncommon bulged-out helix-containing zinc-fingers, and six of their structures (ZF4, ZF5, ZF6, ZF10, ZF11, and ZF13) were determined. The distribution patterns of the putative DNA-binding surface residues are different among the ZFAT zinc-fingers, suggesting the distinct DNA sequence preferences of the N-terminal and C-terminal zinc-fingers. Since ZFAT has three to five consecutive tandem zinc-fingers, which may cooperatively function as a unit, we also determined two tandemly arrayed zinc-finger structures, between ZF2 to ZF4 and ZF3 to ZF5. Our NMR spectroscopic analysis detected the interaction between ZF4 and ZF5, which are connected by an uncommon linker sequence, KKIK. The ZF4-ZF5 linker restrained the relative structural space between the two zinc-fingers in solution, unlike the other linker regions with determined structures, suggesting the involvement of the ZF4-ZF5 interfinger linker in the regulation of ZFAT function.
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Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT.,Tochio N, Umehara T, Nakabayashi K, Yoneyama M, Tsuda K, Shirouzu M, Koshiba S, Watanabe S, Kigawa T, Sasazuki T, Shirasawa S, Yokoyama S J Struct Funct Genomics. 2015 Mar 24. PMID:25801860<ref>PMID:25801860</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2rv4" style="background-color:#fffaf0;"></div>
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== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Lk3 transgenic mice]]
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[[Category: Mus musculus]]
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[[Category: Kigawa, T]]
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[[Category: Kigawa T]]
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[[Category: Tochio, N]]
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[[Category: Tochio N]]
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[[Category: Umehara, T]]
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[[Category: Umehara T]]
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[[Category: Yokoyama, S]]
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[[Category: Yokoyama S]]
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[[Category: Transcription]]
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[[Category: Zfat]]
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[[Category: Zinc finger]]
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Current revision

Solution structures of the DNA-binding domain (ZF5) of mouse immune-related zinc-finger protein ZFAT

PDB ID 2rv4

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