7f8k
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography== | |
+ | <StructureSection load='7f8k' size='340' side='right'caption='[[7f8k]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[7f8k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7F8K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7F8K FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | ||
+ | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TPQ:5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE'>TPQ</scene></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Primary-amine_oxidase Primary-amine oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.21 1.4.3.21] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7f8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7f8k OCA], [https://pdbe.org/7f8k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7f8k RCSB], [https://www.ebi.ac.uk/pdbsum/7f8k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7f8k ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Recent advances in serial femtosecond X-ray crystallography (SFX) using X-ray free-electron lasers have paved the way for determining radiation-damage-free protein structures under nonfreezing conditions. However, the large-scale preparation of high-quality microcrystals of uniform size is a prerequisite for SFX, and this has been a barrier to its widespread application. Here, a convenient method for preparing high-quality microcrystals of a bacterial quinoprotein enzyme, copper amine oxidase from Arthrobacter globiformis, is reported. The method consists of the mechanical crushing of large crystals (5-15 mm(3)), seeding the crushed crystals into the enzyme solution and standing for 1 h at an ambient temperature of approximately 26 degrees C, leading to the rapid formation of microcrystals with a uniform size of 3-5 microm. The microcrystals diffracted X-rays to a resolution beyond 2.0 A in SFX measurements at the SPring-8 Angstrom Compact Free Electron Laser facility. The damage-free structure determined at 2.2 A resolution was essentially identical to that determined previously by cryogenic crystallography using synchrotron X-ray radiation. | ||
- | + | Microcrystal preparation for serial femtosecond X-ray crystallography of bacterial copper amine oxidase.,Murakawa T, Suzuki M, Arima T, Sugahara M, Tanaka T, Tanaka R, Iwata S, Nango E, Tono K, Hayashi H, Fukui K, Yano T, Tanizawa K, Okajima T Acta Crystallogr F Struct Biol Commun. 2021 Oct 1;77(Pt 10):356-363. doi:, 10.1107/S2053230X21008967. Epub 2021 Sep 21. PMID:34605440<ref>PMID:34605440</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 7f8k" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Primary-amine oxidase]] | ||
+ | [[Category: Murakawa, T]] | ||
+ | [[Category: Okajima, T]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Topaquinone copper serial femtosecond x-ray crystallography radiation-damage-free]] |
Current revision
Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography
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