7jsr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:54, 17 October 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='7jsr' size='340' side='right'caption='[[7jsr]], [[Resolution|resolution]] 6.27&Aring;' scene=''>
<StructureSection load='7jsr' size='340' side='right'caption='[[7jsr]], [[Resolution|resolution]] 6.27&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7jsr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycs2 Mycs2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JSR FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JSR FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 6.27&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7a1d|7a1d]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gdh, MSMEG_4699, MSMEI_4582 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246196 MYCS2])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutamate_dehydrogenase Glutamate dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.1.2 1.4.1.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jsr OCA], [https://pdbe.org/7jsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jsr RCSB], [https://www.ebi.ac.uk/pdbsum/7jsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jsr ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jsr OCA], [https://pdbe.org/7jsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jsr RCSB], [https://www.ebi.ac.uk/pdbsum/7jsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jsr ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[[https://www.uniprot.org/uniprot/DHE2_MYCS2 DHE2_MYCS2]] Catalyzes the reversible conversion of L-glutamate to 2-oxoglutarate. Highly specific for NAD.<ref>PMID:19019160</ref>
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Glutamate dehydrogenases (GDHs) are widespread metabolic enzymes that play key roles in nitrogen homeostasis. Large glutamate dehydrogenases composed of 180 kDa subunits (L-GDHs180) contain long N- and C-terminal segments flanking the catalytic core. Despite the relevance of L-GDHs180 in bacterial physiology, the lack of structural data for these enzymes has limited the progress of functional studies. Here we show that the mycobacterial L-GDH180 (mL-GDH180) adopts a quaternary structure that is radically different from that of related low molecular weight enzymes. Intersubunit contacts in mL-GDH180 involve a C-terminal domain that we propose as a new fold and a flexible N-terminal segment comprising ACT-like and PAS-type domains that could act as metabolic sensors for allosteric regulation. These findings uncover unique aspects of the structure-function relationship in the subfamily of L-GDHs.
 
-
3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme.,Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN Commun Biol. 2021 Jun 3;4(1):684. doi: 10.1038/s42003-021-02222-x. PMID:34083757<ref>PMID:34083757</ref>
+
==See Also==
-
 
+
*[[Glutamate dehydrogenase 3D structures|Glutamate dehydrogenase 3D structures]]
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 7jsr" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Glutamate dehydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Mycs2]]
+
[[Category: Abriata LA]]
-
[[Category: Abriata, L A]]
+
[[Category: Alzari PM]]
-
[[Category: Alzari, P M]]
+
[[Category: Bruch EM]]
-
[[Category: Bruch, E M]]
+
[[Category: Delgado S]]
-
[[Category: Delgado, S]]
+
[[Category: Dodu A]]
-
[[Category: Dodu, A]]
+
[[Category: Huet C]]
-
[[Category: Huet, C]]
+
[[Category: Lazaro M]]
-
[[Category: Lazaro, M]]
+
[[Category: Lisa MN]]
-
[[Category: Lisa, M N]]
+
[[Category: Lopez-Alonso JP]]
-
[[Category: Lopez-Alonso, J P]]
+
[[Category: Melero R]]
-
[[Category: Melero, R]]
+
[[Category: Valle M]]
-
[[Category: Valle, M]]
+
-
[[Category: Large glutamate dehydrogenase]]
+
-
[[Category: Metabolism]]
+
-
[[Category: Mycobacterium]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis

PDB ID 7jsr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools