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Glucanase 3D structures

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Current revision (11:06, 13 March 2023) (edit) (undo)
 
Line 10: Line 10:
**[[6imv]] - TfEndo-Gase + sophorose <br />
**[[6imv]] - TfEndo-Gase + sophorose <br />
**[[6imw]] - TfEndo-Gase (mutant) + 1,2–β-glucan <br />
**[[6imw]] - TfEndo-Gase (mutant) + 1,2–β-glucan <br />
 +
**[[5z06]] - Endo-Gase – ''Parabacterioides distasonis''<br />
*Endo-1,3-β-glucanase
*Endo-1,3-β-glucanase
Line 28: Line 29:
**[[4bq1]] - ZgEndo-Gase catalytic domain <br />
**[[4bq1]] - ZgEndo-Gase catalytic domain <br />
**[[5fui]] - ZgEndo-Gase C terminal <br />
**[[5fui]] - ZgEndo-Gase C terminal <br />
 +
**[[7r3t]] - BcEndo-Gase C terminal <br />
**[[4pq9]] - Endo-Gase – ''Mycobacterium marinum'' <br />
**[[4pq9]] - Endo-Gase – ''Mycobacterium marinum'' <br />
**[[5h9x]], [[6a6c]] - PbEndo-Gase – ''Paenibacillus barengoltzii'' <br />
**[[5h9x]], [[6a6c]] - PbEndo-Gase – ''Paenibacillus barengoltzii'' <br />
**[[4wzf]] - MtEndo-Gase – ''Mycobacterium tuberculosis''<br />
**[[4wzf]] - MtEndo-Gase – ''Mycobacterium tuberculosis''<br />
-
**[[5m5z]], [[5m60]] - Endo-Gase – ''Chaetomium thermophilum''<br />
+
**[[5m5z]], [[5m60]] - ChtEndo-Gase – ''Chaetomium thermophilum''<br />
**[[5h4e]] - Endo-Gase – ''Clodytidium beijerinckii''<br />
**[[5h4e]] - Endo-Gase – ''Clodytidium beijerinckii''<br />
 +
**[[6uaq]] - AmEndo-Gase – ''Amycolatopsis mediterranei'' <br />
 +
**[[6ufz]] - AmEndo-Gase (mutant) <br />
 +
**[[6uax]] - Endo-Gase – ''Sorangium cellulosum''<br />
*''Endo-1,3– β-glucanase binary complex''
*''Endo-1,3– β-glucanase binary complex''
Line 40: Line 45:
**[[4bpz]], [[4cte]], [[6gl0]] - ZgEndo-Gase catalytic domain (mutant) + trisasccharide<br />
**[[4bpz]], [[4cte]], [[6gl0]] - ZgEndo-Gase catalytic domain (mutant) + trisasccharide<br />
**[[5h9y]] - PbEndo-Gase + laminarihexaose <br />
**[[5h9y]] - PbEndo-Gase + laminarihexaose <br />
 +
**[[5xcy]], [[5xcz]] - PcEndo-Gase + cellobiose <br />
**[[5xbz]], [[5xc2]] - RmEndo-Gase + laminaripentaose <br />
**[[5xbz]], [[5xc2]] - RmEndo-Gase + laminaripentaose <br />
-
**[[6xqf]] - ubEndo-Gase + polysaccharide – uncultured bacteria<br />
+
**[[6xqf]], [[6xqg]], [[6xql]], [[6xqm]] - ubEndo-Gase + polysaccharide – uncultured bacteria<br />
-
**[[6xqm]] - ubEndo-Gase + laminarihexaose <br />
+
**[[6xqh]] - ubEndo-Gase (mutant) + polysaccharide <br />
-
**[[6uar]] - Endo-Gase + laminaritriose – ''Amycolatopsis mediterranei'' <br />
+
**[[6uar]] - AmEndo-Gase + polysaccharide - ''Amycolatopsis mediterranei''<br />
 +
**[[6ufl]], [[6uas]], [[6uat]], [[6uau]] - AmEndo-Gase (mutant) + polysaccharide <br />
*Endo-1,4-β-glucanase
*Endo-1,4-β-glucanase
-
**[[3pzu]], [[3pzv]] – BsEndo-Gase catalytic domain 27-332 – ''Bacillus subtilis''<br />
+
**[[3pzu]], [[3pzv]], [[6ufv]], [[6ufw]] – BsEndo-Gase catalytic domain 27-332 – ''Bacillus subtilis''<br />
**[[7cju]] - BsEndo-Gase catalytic domain (mutant)<br />
**[[7cju]] - BsEndo-Gase catalytic domain (mutant)<br />
**[[2l8a]] - BsEndo-Gase CRM3 domain 354-499<br />
**[[2l8a]] - BsEndo-Gase CRM3 domain 354-499<br />
Line 53: Line 60:
**[[1j83]] - CcEndo-Gase ENGF <br />
**[[1j83]] - CcEndo-Gase ENGF <br />
**[[3ik2]] - Endo-Gase A residues 34-541 – ''Clostridium acetobulylicum''<br />
**[[3ik2]] - Endo-Gase A residues 34-541 – ''Clostridium acetobulylicum''<br />
 +
**[[6q1i]] - Endo-Gase A – ''Clostridium longisporum''<br />
**[[2xfg]], [[5byw]] - CtEndo-Gase 1 catalytic and cellulose-binding domains – ''Clostridium thermocellum''<br />
**[[2xfg]], [[5byw]] - CtEndo-Gase 1 catalytic and cellulose-binding domains – ''Clostridium thermocellum''<br />
**[[1cem]], [[2e0p]], [[1is9]] - CtEndo-Gase A catalytic domain<br />
**[[1cem]], [[2e0p]], [[1is9]] - CtEndo-Gase A catalytic domain<br />
Line 110: Line 118:
**[[5cd2]] - Endo-Gase – ''Vibrio fischeri'' <br />
**[[5cd2]] - Endo-Gase – ''Vibrio fischeri'' <br />
**[[5xbu]] - AcEndo-Gase – ''Ampullaria crossean''<br />
**[[5xbu]] - AcEndo-Gase – ''Ampullaria crossean''<br />
 +
**[[7t7y]], [[7t7z]] - Endo-Gase – ''Dictyostelium discoideum''<br />
 +
**[[5hos]] - XaEndo-Gase – ''Xanthomonas axonopodis''<br />
 +
**[[5hnn]] - XaEndo-Gase (mutant) <br />
 +
**[[1wzz]] - Endo-Gase – ''Komagataeibacher xylinus''<br />
 +
**[[8e1w]] - Endo-Gase – ''Panus similis''<br />
*''Endo-1,4–β-glucanase binary complex''
*''Endo-1,4–β-glucanase binary complex''
Line 128: Line 141:
**[[3amm]] - TmEndo-Gase + polysaccharide<br />
**[[3amm]] - TmEndo-Gase + polysaccharide<br />
**[[3amn]], [[3amp]], [[3amq]] - TmEndo-Gase (mutant) + polysaccharide<br />
**[[3amn]], [[3amp]], [[3amq]] - TmEndo-Gase (mutant) + polysaccharide<br />
 +
**[[7ec9]] - TmEndo-Gase + jiromycin derivative<br />
**[[2bod]], [[2bof]], [[2bog]] - TfEndo-Gase E2 catalytic domain + polysaccharide<br />
**[[2bod]], [[2bof]], [[2bog]] - TfEndo-Gase E2 catalytic domain + polysaccharide<br />
**[[3tf4]], [[4tf4]] - TfEndo-Gase E4 catalytic domain + polysaccharide<br />
**[[3tf4]], [[4tf4]] - TfEndo-Gase E4 catalytic domain + polysaccharide<br />
Line 147: Line 161:
**[[5i79]] - AnEndo-Gase (mutant) + polysaccharide<br />
**[[5i79]] - AnEndo-Gase (mutant) + polysaccharide<br />
**[[5xc4]], [[5xc8]], [[5xc9]], [[5xbx]] - AcEndo-Gase + cellobiose <br />
**[[5xc4]], [[5xc8]], [[5xc9]], [[5xbx]] - AcEndo-Gase + cellobiose <br />
 +
**[[5xca]] - AcEndo-Gase (mutant) + cellobiose <br />
 +
**[[5ljf]] - ubEndo-Gase (mutant) + polysaccharide <br />
**[[4doe]] - CbEndo-Gase GH9 module + ligand<br />
**[[4doe]] - CbEndo-Gase GH9 module + ligand<br />
**[[6r2j]] - PsEndo-Gase + cellobiose <br />
**[[6r2j]] - PsEndo-Gase + cellobiose <br />
 +
 +
*Endo-1,6-β-glucanase
 +
 +
**[[5ngk]], [[5ngl]] – BtEndo-Gase – ''Bacterioides thetaiotamicron''<br />
*Endo-1,3-1,4-β-glucanase
*Endo-1,3-1,4-β-glucanase
Line 166: Line 186:
**[[4x0v]] - CbEndo-Gase GH5 module <br />
**[[4x0v]] - CbEndo-Gase GH5 module <br />
**[[5h4r]] - CbEndo-Gase GH5 module (mutant) + cellotetraose<br />
**[[5h4r]] - CbEndo-Gase GH5 module (mutant) + cellotetraose<br />
 +
**[[7ee2]] – ChtEndo-Gase <br />
 +
**[[7eee]], [[7eej]] – ChtEndo-Gase + polysaccharide <br />
*''Endo-1,3-1,4–β-glucanase binary complex''
*''Endo-1,3-1,4–β-glucanase binary complex''
Line 218: Line 240:
**[[6su8]] - Endo-Gase – ''Rasamsonia emersonii''<br />
**[[6su8]] - Endo-Gase – ''Rasamsonia emersonii''<br />
**[[6mvj]] - Endo-Gase V – ''Neurospora crassi''<br />
**[[6mvj]] - Endo-Gase V – ''Neurospora crassi''<br />
 +
**[[7f81]] - EntEndo-Gase – ''Enterobacter''<br />
*''Non-specific endo-glucanase binary complex''
*''Non-specific endo-glucanase binary complex''
Line 242: Line 265:
**[[6ujf]] - Endo-Gase + glucose – ''Clostridioides difficile''<br />
**[[6ujf]] - Endo-Gase + glucose – ''Clostridioides difficile''<br />
**[[6wqv]] - Endo-Gase + polysaccharide – ''Ruminococcus champanellensis''<br />
**[[6wqv]] - Endo-Gase + polysaccharide – ''Ruminococcus champanellensis''<br />
 +
**[[7f82]] - EntEndo-Gase + polysaccharide <br />
*Exo-1,3-β-glucanase
*Exo-1,3-β-glucanase
-
**[[3o6a]], [[4m80]] - CaExo-Gase (mutant) – ''Candida albicans''<br />
 
-
**[[1eqp]], [[1cz1]] - CaExo-Gase<br />
 
**[[1ex1]] - bExo-Gase<br />
**[[1ex1]] - bExo-Gase<br />
**[[1h4p]] - Exo-Gase – yeast<br />
**[[1h4p]] - Exo-Gase – yeast<br />
 +
**[[2pbo]], [[2pf0]], [[3o6a]], [[4m80]] - CaExo-Gase (mutant) – ''Candida albicans''<br />
 +
**[[1eqp]], [[1cz1]] - CaExo-Gase<br />
 +
**[[2pb1]], [[2pc8]] - CaExo-Gase + polysaccharide <br />
 +
**[[6zb9]] - miExo-Gase - microbiome<br />
 +
**[[6zb8]] - miExo-Gase (mutant) <br />
 +
**[[6ub7]] - Exo-Gase – Cryptococcus neoformans<br />
 +
**[[6uay]] - BgExo-Gase – Blastomyces gilchristi<br />
 +
**[[6ub8]] - AnExo-Gase – Aureobasidium namibiae<br />
**[[6zb9]] - miExo-Gase - microbiome<br />
**[[6zb9]] - miExo-Gase - microbiome<br />
**[[6zb8]] - miExo-Gase (mutant) <br />
**[[6zb8]] - miExo-Gase (mutant) <br />
Line 289: Line 319:
**[[4le3]] – PaBGase – ''Podospora anserina''<br />
**[[4le3]] – PaBGase – ''Podospora anserina''<br />
**[[4le4]] – PaBGase + cellotriose<br />
**[[4le4]] – PaBGase + cellotriose<br />
 +
**[[6uav]], [[6uaw]] – BGase + laminaritriose – ''Pseudomonas viridiflava''<br />
 +
**[[7vtk]] – SpBGase – ''Streptomyces pratensis''<br />
 +
**[[7vtl]], [[7vtm]] – SpBGase + polysaccharide <br />
 +
**[[7ww4]] – PeBGase – ''Pedobacter''<br />
 +
**[[7wwc]] – PeBGase + laminaritriose <br />
 +
**[[7quz]], [[7r1n]] – BcBGase C terminal<br />
 +
**[[7eo3]] – BGase – ''Actinobacteria bacterium''<br />
*α-1,3-glucanase (AGase)
*α-1,3-glucanase (AGase)
Line 300: Line 337:
* β-glucanase
* β-glucanase
-
**[[6euf]], [[6euj]] – BtBGase – ''Bacterioides thetaiotamicron''<br />
+
**[[6euf]], [[6euj]] – BtBGase <br />
**[[6eug]] – BtBGase + galactoimidazole<br />
**[[6eug]] – BtBGase + galactoimidazole<br />
**[[6euh]] – BtBGase + jirimycin derivative<br />
**[[6euh]] – BtBGase + jirimycin derivative<br />
**[[6eui]] – BtBGase + galactose<br />
**[[6eui]] – BtBGase + galactose<br />
**[[3wvj]] – CtBGase <br />
**[[3wvj]] – CtBGase <br />
 +
**[[5a8m]] – SdBGase – ''Saccharophagus degradans''<br />
 +
**[[5a8o]], [[5a94]], [[5a95]] – SdBGase + polysaccharide <br />
*Xyloglucanase
*Xyloglucanase
Line 315: Line 354:
**[[2jep]] - PpXGase – ''Paenibacillus pabuli'' <br />
**[[2jep]] - PpXGase – ''Paenibacillus pabuli'' <br />
**[[3a0f]] - XGase – ''Geotrichum''<br />
**[[3a0f]] - XGase – ''Geotrichum''<br />
-
**[[4w84]] - ubXGase <br />
+
**[[4w84]], [[4w8a]], [[4w8b]] - ubXGase <br />
**[[5fkt]] - XGase – ''Cellvibrio japonicus''<br />
**[[5fkt]] - XGase – ''Cellvibrio japonicus''<br />

Current revision

3D structures of glucanase

Updated on 13-March-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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