1l0q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:05, 26 March 2025) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='1l0q' size='340' side='right'caption='[[1l0q]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='1l0q' size='340' side='right'caption='[[1l0q]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1l0q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_mazei_s-6 Methanosarcina mazei s-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L0Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1l0q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_mazei_S-6 Methanosarcina mazei S-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L0Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L0Q FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=YCM:S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE'>YCM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ijq|1ijq]], [[1b4r|1b4r]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=YCM:S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE'>YCM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l0q OCA], [https://pdbe.org/1l0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l0q RCSB], [https://www.ebi.ac.uk/pdbsum/1l0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l0q ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l0q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l0q OCA], [https://pdbe.org/1l0q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l0q RCSB], [https://www.ebi.ac.uk/pdbsum/1l0q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l0q ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q50245_METMZ Q50245_METMZ]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l0/1l0q_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l0/1l0q_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 32: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Methanosarcina mazei s-6]]
+
[[Category: Methanosarcina mazei S-6]]
-
[[Category: Jing, H]]
+
[[Category: Jing H]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Lindgren, S]]
+
[[Category: Lindgren S]]
-
[[Category: Liu, J H]]
+
[[Category: Liu J-H]]
-
[[Category: Springer, T A]]
+
[[Category: Springer TA]]
-
[[Category: Takagi, J]]
+
[[Category: Takagi J]]
-
[[Category: Wang, J H]]
+
[[Category: Wang J-H]]
-
[[Category: Zhang, R G]]
+
[[Category: Zhang R-G]]
-
[[Category: 7-bladed beta-propeller]]
+
-
[[Category: Pkd superfamily]]
+
-
[[Category: Protein binding]]
+
-
[[Category: S-layer]]
+
-
[[Category: Slp]]
+
-
[[Category: Surface layer protein]]
+

Current revision

Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein

PDB ID 1l0q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools