Sandbox Reserved 1675

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{{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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==PYCR-1 Complexed with NFLP==
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==Human PYCR-1 Complexed with NFLP==
<StructureSection load='6XP0' size='340' side='right' caption='Caption for this structure' scene=''>
<StructureSection load='6XP0' size='340' side='right' caption='Caption for this structure' scene=''>
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This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
 
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
 
== Function of your protein ==
== Function of your protein ==
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Interrupts the proline cycle in cancerous cells, and decreases spheroid growth. <ref>33109600/<ref>
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Converts P5C to proline. When complexed with NFLP, NFLP inhibits this function, interrupting the proline cycle in cancerous cells, and decreasing spheroid growth. <ref>PMID:33109600</ref>
== Biological relevance and broader implications ==
== Biological relevance and broader implications ==
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PYCR-1 has been shown to have have many effects on the survival and proliferation of cancerous cells when the proline cycle is able to continue <ref>PMID:33109600</ref>. NFLP is a competitive inhibitor of PYCR-1. When NFLP is able to bind it changes the conformation of the protein, which in turn makes it unable to convert P5C to proline, and disrupts the proline cycle <ref>PMID:33109600</ref>. In this way, NFLP shows potential for further research into reducing the success of cancerous cells. Since NFLP is a competitive inhibitor, this means that some PYCR-1 protein will still bind P5C and partake in the proline cycle. NFLP then shows promise to reduce, but not eliminate the proliferation of cancer. Research should be done into any analogs of NFLP which could prove to be more successful inhibitors.
== Important amino acids==
== Important amino acids==
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Histidine 223, Asparagine 229, Valine 231, Serine 233, and Alanine 237.
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When we look at the primary structure of the protein, there are specific amino acids important to the binding on NFLP. These amino acids are Histidine 223, Aspartic acid 229, Valine 231, Serine 233, and Alanine 237<ref>PMID:33109600</ref>.
== Structural highlights ==
== Structural highlights ==
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== Other important features ==
== Other important features ==
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<scene name='87/873237/Proline_bound/1'>PYCR-1 bound to proline for cross reference, in stick and wire,</scene> <scene name='87/873237/Proline_bound/2'>ribbon,</scene> <scene name='87/873237/Proline_bound/3'>and space fill.
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</scene>
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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The other unique feature that allows NFLP to bind more tightly than proline is that the alphaK helices rotate 1 angstrom, <scene name='87/873237/Proline_bound_his/2'>which causes his-223 on each subunit to avoid a steric clash</scene>, and the helices glide past each other, which makes the molecule more capable of accommodating the formyl group of NFLP<ref>PMID:33109600</ref>.
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
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Human PYCR-1 Complexed with NFLP

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
  2. Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
  3. Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
  4. Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
  5. Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
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