Sandbox Reserved 1675
From Proteopedia
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{{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> | {{Sandbox_Reserved_BHall_Sp21}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> | ||
- | ==PYCR-1 Complexed with NFLP== | + | ==Human PYCR-1 Complexed with NFLP== |
<StructureSection load='6XP0' size='340' side='right' caption='Caption for this structure' scene=''> | <StructureSection load='6XP0' size='340' side='right' caption='Caption for this structure' scene=''> | ||
- | This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
- | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
== Function of your protein == | == Function of your protein == | ||
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== Important amino acids== | == Important amino acids== | ||
- | Histidine 223, | + | When we look at the primary structure of the protein, there are specific amino acids important to the binding on NFLP. These amino acids are Histidine 223, Aspartic acid 229, Valine 231, Serine 233, and Alanine 237<ref>PMID:33109600</ref>. |
== Structural highlights == | == Structural highlights == | ||
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<scene name='87/873237/Proline_bound/1'>PYCR-1 bound to proline for cross reference, in stick and wire,</scene> <scene name='87/873237/Proline_bound/2'>ribbon,</scene> <scene name='87/873237/Proline_bound/3'>and space fill. | <scene name='87/873237/Proline_bound/1'>PYCR-1 bound to proline for cross reference, in stick and wire,</scene> <scene name='87/873237/Proline_bound/2'>ribbon,</scene> <scene name='87/873237/Proline_bound/3'>and space fill. | ||
</scene> | </scene> | ||
+ | |||
+ | The other unique feature that allows NFLP to bind more tightly than proline is that the alphaK helices rotate 1 angstrom, <scene name='87/873237/Proline_bound_his/2'>which causes his-223 on each subunit to avoid a steric clash</scene>, and the helices glide past each other, which makes the molecule more capable of accommodating the formyl group of NFLP<ref>PMID:33109600</ref>. | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> |
Current revision
This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682. |
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Human PYCR-1 Complexed with NFLP
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References
- ↑ Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
- ↑ Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
- ↑ Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
- ↑ Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106
- ↑ Christensen EM, Bogner AN, Vandekeere A, Tam GS, Patel SM, Becker DF, Fendt SM, Tanner JJ. In Crystallo Screening for Proline Analog Inhibitors of the Proline Cycle Enzyme PYCR1. J Biol Chem. 2020 Oct 27. pii: RA120.016106. doi: 10.1074/jbc.RA120.016106. PMID:33109600 doi:http://dx.doi.org/10.1074/jbc.RA120.016106