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Histone 3D structures

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Current revision (11:34, 23 August 2023) (edit) (undo)
 
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Line 13: Line 13:
**[[1hst]] – cH5<br />
**[[1hst]] – cH5<br />
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – Cryo EM<br />
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – Cryo EM<br />
-
**[[6k01]], [[6w4l]] - XlH2A/H2B - Xenopus laevis <br />
+
**[[6k01]], [[6w4l]] - XlH2A/H2B - ''Xenopus laevis'' <br />
-
**[[6k03]] - CeH2A + H2B – Caenorhabditis elegans<br />
+
**[[7pj1]] – DmH2A + H2B – ''Drosophila melanogaster'' - NMR<br />
 +
**[[6k03]] - CeH2A + H2B – ''Caenorhabditis elegans''<br />
**[[1yqa]] – yH1 (mutant) – yeast – NMR<br />
**[[1yqa]] – yH1 (mutant) – yeast – NMR<br />
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain – NMR<br />
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain – NMR<br />
-
**[[1ku5]] – HPHA – Pyrococcus horikoshii<br />
+
**[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<br />
-
**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – Methanococcus fervidus<br />
+
**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – ''Methanococcus fervidus''<br />
**[[1bfm]] – MfHB - NMR<br />
**[[1bfm]] – MfHB - NMR<br />
-
**[[1f1e]] – H – Methanopyrus kandleri<br />
+
**[[1f1e]] – H – ''Methanopyrus kandleri''<br />
*Histones complex with protein
*Histones complex with protein
Line 34: Line 35:
**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
**[[6mim]], [[6mil]] – hH3 + AF9<br />
**[[6mim]], [[6mil]] – hH3 + AF9<br />
 +
**[[7v6q]] – hH3.1 + H4 + NASP + ASF1A<br />
 +
**[[7vcl]] – hH2A + H2B + BKRF4<br />
 +
**[[8i17]] – hH2A + H2B + SPT16<br />
 +
**[[7qxb]], [[7trf]] – hH2A + H2B + telomerase reverse transcriptase + RNA – Cryo EM<br />
 +
**[[7qxa]] – hH2A + H2B + telomerase reverse transcriptase + adrenocortical dysplasia protein + RNA – Cryo EM<br />
 +
**[[8h0v]], [[8h0w]] – hH2A + H2B + H4 + H1.2 in RNA polymerase complex – Cryo EM<br />
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
 +
**[[7cj0]] – hH3.3 + H4 + HDJC9 + MCM2<br />
**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
 +
**[[7vcq]] – hH3.3 + H4 + ASF1B + BKRF4<br />
**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
-
**[[6hbo]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
+
**[[6qxz]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
**[[6vil]] – hH3.1 + BAHCC1<br />
**[[6vil]] – hH3.1 + BAHCC1<br />
**[[7ciz]] – hH3.3 + H4 + MCM2<br />
**[[7ciz]] – hH3.3 + H4 + MCM2<br />
Line 50: Line 59:
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
**[[6o22]] - XlH3.2 + H4 + RTT109 + ASF1<br />
**[[6o22]] - XlH3.2 + H4 + RTT109 + ASF1<br />
-
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1<br />
+
**[[7unk]] - XlH3 + H4 + importin-4 + ASF1<br />
 +
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + ASF1<br />
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
**[[6k09]], [[6k0c]] - CeH2A + H2B + NAP1<br />
**[[6k09]], [[6k0c]] - CeH2A + H2B + NAP1<br />
Line 59: Line 69:
**[[4wnn]] – yH32A + H2B + SPT2<br />
**[[4wnn]] – yH32A + H2B + SPT2<br />
**[[2hue]] - yH3 + H4 + anti-silencing protein<br />
**[[2hue]] - yH3 + H4 + anti-silencing protein<br />
-
**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor – ''Drosophila melanogaster''<br />
+
**[[7xay]] - yH3 + H4 + cytochrome b562 + ASF1<br />
 +
**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor <br />
**[[2yfv]], [[2yfw]] - KlH4 + H3-like centromeric protein + SCM3 – ''Kluyveromyces lactis''<br />
**[[2yfv]], [[2yfw]] - KlH4 + H3-like centromeric protein + SCM3 – ''Kluyveromyces lactis''<br />
**[[6uph]] - Kl H3-like centromeric protein + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6uph]] - Kl H3-like centromeric protein + H4 + H2A + H2B in nucleosome – Cryo EM<br />
Line 68: Line 79:
**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]], [[6hkt]], [[6jou]], [[6jr0]], [[6jr1]], [[6k1i]], [[6k1j]], [[6j1k]], [[6ke9]], [[6l9h]], [[6le9]], [[6ipu]], [[6iq4]], [[6jxd]], [[6kvd]], [[6ler]], [[6m3v]], [[6m44]], [[6v2k]] – hH3.1 + H4 + H2A + H2B in nucleosome<br />
**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]], [[6hkt]], [[6jou]], [[6jr0]], [[6jr1]], [[6k1i]], [[6k1j]], [[6j1k]], [[6ke9]], [[6l9h]], [[6le9]], [[6ipu]], [[6iq4]], [[6jxd]], [[6kvd]], [[6ler]], [[6m3v]], [[6m44]], [[6v2k]] – hH3.1 + H4 + H2A + H2B in nucleosome<br />
**[[6r0c]], [[6t79]], [[6r94]], [[6r93]], [[6l4a]], [[6t93]], [[7nl0]] – hH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6r0c]], [[6t79]], [[6r94]], [[6r93]], [[6l4a]], [[6t93]], [[7nl0]] – hH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
 +
**[[6l49]], [[6l9z]], [[6m4d]], [[6m4g]], [[6m4h]], [[6r25]], [[7u51]], [[7u52]], [[7u53]], [[7v90]], [[7v9c]], [[7v9j]], [[7v9k]], [[7v9s]], [[7va4]], [[7v96]], [[7xd1]], [[7xzy]], [[7y00]], [[8aag]] - hH3.1 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B in nucleosome<br />
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B in nucleosome<br />
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) in nucleosome<br />
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) in nucleosome<br />
Line 74: Line 86:
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B in nucleosome<br />
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]] - hH3.1 + H4 (mutant) + H2A + H2B in nucleosome<br />
**[[7lya]] - hH3.1 + H4 + H2B in nucleosome – Cryo EM<br />
**[[7lya]] - hH3.1 + H4 + H2B in nucleosome – Cryo EM<br />
-
**[[6l49]], [[6l9z]], [[6m4d]], [[6m4g]], [[6m4h]], [[6r25]] - hH3.1 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
 
**[[6pwx]] - hH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6pwx]] - hH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
 +
**[[7pet]], [[7peu]], [[7pev]], [[7pew]], [[7pex]], [[7pey]], [[7pez]], [[7pf0]], [[7pf2]], [[7pf3]], [[7pf4]], [[7pf5]], [[7pf6]], [[7pfa]], [[7pfc]], [[7pfd]], [[7pfe]], [[7pff]], [[7pft]], [[7pfu]], [[7pfv]], [[7pfw]], [[7pfx]] - hH3.2 + H4 + H2A + H2B + H1.4 in nucleosome – Cryo EM<br />
 +
**[[7x57]], [[7x58]] - hH3.1 + H4 in nucleosome – Cryo EM<br />
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B in nucleosome + Ru derivative<br />
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B in nucleosome + Ru derivative<br />
Line 82: Line 95:
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B in nucleosome + SNF2<br />
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B in nucleosome + SNF2<br />
**[[3an2]], [[4x23]] – hH4 + H2A + H2B in nucleosome + H3-like centromeric protein <br />
**[[3an2]], [[4x23]] – hH4 + H2A + H2B in nucleosome + H3-like centromeric protein <br />
 +
**[[7uv9]] – hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + lysine-specific histone demethylase – Cryo EM<br />
**[[6r25]] – hH3 + H4 + H2A + H2B in nucleosome + NPAC + lysine-specific histone demethylase – Cryo EM<br />
**[[6r25]] – hH3 + H4 + H2A + H2B in nucleosome + NPAC + lysine-specific histone demethylase – Cryo EM<br />
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B in nucleosome + DNA damage-binding protein – Cryo EM<br />
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B in nucleosome + DNA damage-binding protein – Cryo EM<br />
**[[5e5a]] - hH3.2 + H4 + H2A + H2B in nucleosome + IE1<br />
**[[5e5a]] - hH3.2 + H4 + H2A + H2B in nucleosome + IE1<br />
-
**[[7lyb]] - hH3.1 + H4 + H2B in nucleosome + BRCA1 + BARD1 +UbCH5C – Cryo EM<br />
+
**[[7e8i]], [[7lyb]], [[8grq]] - hH3.1 + H4 + H2B in nucleosome + BRCA1 + BARD1 + UbCH5C – Cryo EM<br />
 +
**[[8grm]] - hH3.1 + H4 + H2B in nucleosome + Commd3 + Ring1B + UbCH5B – Cryo EM<br />
**[[7jzv]] - hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + BRAC1 – Cryo EM<br />
**[[7jzv]] - hH3.2 (mutant) + H4 + H2A + H2B in nucleosome + BRAC1 – Cryo EM<br />
**[[6uxw]] - hH3.3 + H4 + H2A + H2B in nucleosome + SWI/SNF complex – Cryo EM<br />
**[[6uxw]] - hH3.3 + H4 + H2A + H2B in nucleosome + SWI/SNF complex – Cryo EM<br />
**[[7ea8]] - hH3.3 + H4 + H2A + H2B in nucleosome + SETD2 – Cryo EM<br />
**[[7ea8]] - hH3.3 + H4 + H2A + H2B in nucleosome + SETD2 – Cryo EM<br />
**[[7d1z]] - hH3.1 + H4 + H2A + H2B in nucleosome + SET8 – Cryo EM<br />
**[[7d1z]] - hH3.1 + H4 + H2A + H2B in nucleosome + SET8 – Cryo EM<br />
 +
**[[7d20]] - hH4 + H2A + H2B in nucleosome + SET8 + Cenp-A – Cryo EM<br />
 +
**[[7r5r]] - hH4 + H2A + H2B in nucleosome + CenP-A + CenP-C – Cryo EM<br />
 +
**[[7y7i]] - hH4 + H2A + H2B in nucleosome + CenP-A + KNL2 – Cryo EM<br />
**[[6muo]], [[6mup]], [[7bxt]], [[7by0]] - hH4 + H2A + H2B in nucleosome + CenP-A + CenP-C + CenP-N – Cryo EM<br />
**[[6muo]], [[6mup]], [[7bxt]], [[7by0]] - hH4 + H2A + H2B in nucleosome + CenP-A + CenP-C + CenP-N – Cryo EM<br />
-
**[[6x59]], [[6x5a]], [[6xjd]], [[6y5d]], [[6y5e]], [[7jo9]], [[7joa]] - hH3.3 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
+
**[[7pii]] - hH4 + H2A + H2B in nucleosome + CenP-C – Cryo EM<br />
 +
**[[7u46]], [[7u47]] - hH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br />
 +
**[[7ywx]], [[7yyh]] - hH4 + H2A + H2B in nucleosome + CenP-A,C,H-Q,R,U – Cryo EM<br />
 +
**[[7xd0]] - hH4 + H2A + H2B in nucleosome + L40 + histone domain-containing protein – Cryo EM<br />
 +
**[[6x59]], [[6x5a]], [[6xjd]], [[6y5d]], [[6y5e]], [[7a08]], [[7jo9]], [[7joa]] - hH3.3 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
**[[7c0m]], [[7ccq]], [[7ccr]] - hH3.1 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
**[[7c0m]], [[7ccq]], [[7ccr]] - hH3.1 + H4 + H2A + H2B in nucleosome + cGAS – Cryo EM<br />
**[[7bwd]] - hH3.1 + H4 + H2A + H2B in nucleosome + DOT1 + ubiquitin – Cryo EM<br />
**[[7bwd]] - hH3.1 + H4 + H2A + H2B in nucleosome + DOT1 + ubiquitin – Cryo EM<br />
 +
**[[7xcr]], [[7xct]] - hH4 + H2A + H2B in nucleosome + DOT1L + ubiquitin – Cryo EM<br />
**[[7lyc]] - hH3.1 + H4 + H2A + H2B in nucleosome + BARD1 + ubiquitin – Cryo EM<br />
**[[7lyc]] - hH3.1 + H4 + H2A + H2B in nucleosome + BARD1 + ubiquitin – Cryo EM<br />
 +
**[[7scy]], [[7scz]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP1 – Cryo EM<br />
 +
**[[7e8d]] - hH3.1 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br />
**[[6usj]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP2 – Cryo EM<br />
**[[6usj]] - hH3.1 + H4 + H2A + H2B in nucleosome + PARP2 – Cryo EM<br />
**[[6t7a]], [[6t7b]], [[6t7c]], [[6t7d]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX – Cryo EM<br />
**[[6t7a]], [[6t7b]], [[6t7c]], [[6t7d]] - hH3.2 + H4 + H2A + H2B in nucleosome + SOX – Cryo EM<br />
Line 101: Line 126:
**[[6upk]], [[6upl]] - hH3.1 + H4 + H2A + H2B in nucleosome + FACT complex – Cryo EM<br />
**[[6upk]], [[6upl]] - hH3.1 + H4 + H2A + H2B in nucleosome + FACT complex – Cryo EM<br />
**[[6v92]] – hH3.1 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br />
**[[6v92]] – hH3.1 + H4 + H2A + H2B in nucleosome + RSC complex – Cryo EM<br />
 +
**[[8g57]] – hH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br />
 +
**[[7u50]] – hH3 + H4 + H2A + H2B in nucleosome + APE1 – Cryo EM<br />
 +
**[[7xzx]], [[7xzz]] – hH3 + H4 + H2A + H2B in nucleosome + p53 – Cryo EM<br />
 +
**[[7zi4]], [[8av6]] – hH3.2 + H4 + H2A + H2B in nucleosome INO80 complex – Cryo EM<br />
 +
**[[8atf]] – hH3.2 + H4 + H2A + H2B in nucleosome + INO80 + PAPA-1 domain-containing protein – Cryo EM<br />
 +
**[[7yqk]] – hH3.1 + H4 + H2A + H2B in nucleosome + polyubiquitin + 53bp1 + TP53-binding protein – Cryo EM<br />
 +
**[[7w9v]] – hH3.1 + H4 + H2A + H2B in nucleosome + p300 – Cryo EM<br />
 +
**[[7tan]] – hH3.2 + H4 + H2A + H2B in nucleosome + VRK1 – Cryo EM<br />
 +
**[[7y8r]] - hH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br />
**[[6fml]] – hH3.2 + H4 + H2A + H2B in nucleosome + RuvB + actin-related protein + IES6 - Cryo EM<br />
**[[6fml]] – hH3.2 + H4 + H2A + H2B in nucleosome + RuvB + actin-related protein + IES6 - Cryo EM<br />
Line 107: Line 141:
**[[6r1t]], [[6px1]] - XlH3 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6r1t]], [[6px1]] - XlH3 + H2A + H2B in nucleosome – Cryo EM<br />
**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]] [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B in nucleosome<br />
**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]] [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]], [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B in nucleosome<br />
-
**[[6wz5]], [[6wz9]], [[7ohc]] - XlH3.2 + H4 + H2A + H2B in nucleosome - Cryo EM<br />
+
**[[6wz5]], [[6wz9]], [[7kbd]], [[7kbe]], [[7m1x]], [[7ohc]], [[7xfc]], [[7xfi]], [[7xfl]], [[7xfn]], [[7xnp]] - XlH3.2 + H4 + H2A + H2B in nucleosome - Cryo EM<br />
 +
**[[7kbf]] - XlH3.2 + H4 + H2A + H2B + H1.8 in nucleosome - Cryo EM<br />
 +
**[[7swy]] - XlH3 (mutant) + H4 + H2A + H2B (mutant) n nucleosome - Cryo EM<br />
**[[7ktq]] - XlH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[7ktq]] - XlH3 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6esi]], [[6esh]], [[6esg]], [[6esf]], [[6fq8]], [[6fq6]], [[6fq5]], [[6nn6]], [[6nog]], [[6nzo]], [[6px3]], [[6r1u]], [[6ugm]] - XlH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[6esi]], [[6esh]], [[6esg]], [[6esf]], [[6fq8]], [[6fq6]], [[6fq5]], [[6nn6]], [[6nog]], [[6nzo]], [[6px3]], [[6r1u]], [[6ugm]] - XlH3.2 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
Line 123: Line 159:
**[[6pwx]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 - Cryo EM<br />
**[[6pwx]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 - Cryo EM<br />
**[[6pww]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 + WDR5 - Cryo EM<br />
**[[6pww]] - XlH3.2 + H4 + H2A + H2B in nucleosome + RBBP5 + WDR5 - Cryo EM<br />
 +
**[[7mbm]], [[7mbn]] - XlH3 + H4 + H2A + H2B in nucleosome + RBBP5 + WDR5 + ALL-1 + ASH2-like protein - Cryo EM<br />
 +
**[[7ud5]] - XlH3 + H4 + H2A + H2B (mutant) in nucleosome + RBBP5 + WDR5 + cDNA + ASH2-like protein + DPY-30 + polyUb- Cryo EM<br />
 +
**[[8du4]] - XlH3 + H4 + H2A + H2B (mutant) in nucleosome + RBBP5 + WDR5 + polyUb- Cryo EM<br />
 +
**[[7vdt]] - XlH3 + H4 + H2A + H2B in nucleosome + BRG1 - Cryo EM<br />
 +
**[[7vdv]] - XlH3 + H4 + H2A + H2B in nucleosome PBAF complex - Cryo EM<br />
**[[6om3]] - XlH3.2 + H4 + H2A + H2B in nucleosome + origin recognition complex <br />
**[[6om3]] - XlH3.2 + H4 + H2A + H2B in nucleosome + origin recognition complex <br />
**[[6vyp]] - XlH3 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + LSD1 + COREST<br />
**[[6vyp]] - XlH3 (mutant) + H4 + H2A (mutant) + H2B (mutant) in nucleosome + LSD1 + COREST<br />
 +
**[[7otq]], [[7tn2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD1 – Cryo EM<br />
 +
**[[7cro]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD2 – Cryo EM<br />
 +
**[[8f86]] – XlH3 + H4 + H2A + H2B in nucleosome + sirtuin 6 deacylase – Cryo EM<br />
**[[6ryr]], [[6ryu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD4 – Cryo EM<br />
**[[6ryr]], [[6ryu]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD4 – Cryo EM<br />
**[[7crp]], [[7crr]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD3 – Cryo EM<br />
**[[7crp]], [[7crr]] - XlH3 + H4 + H2A + H2B in nucleosome + NSD3 – Cryo EM<br />
Line 132: Line 176:
**[[6kiu]], [[6kiv]], [[6kiw]], [[6kix]], [[6kiz]], [[6pwv]], [[6w5i]], [[6w5m]], [[6w5n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + MLL1 core complex – Cryo EM<br />
**[[6kiu]], [[6kiv]], [[6kiw]], [[6kix]], [[6kiz]], [[6pwv]], [[6w5i]], [[6w5m]], [[6w5n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + MLL1 core complex – Cryo EM<br />
**[[7ohb]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP – Cryo EM<br />
**[[7ohb]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP – Cryo EM<br />
-
**[[7oh9]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP + TFIIA – Cryo EM<br />
+
**[[7oh9]], [[7oha]] - XlH3.2 + H4 + H2A + H2B in nucleosome + TBP + TFIIA – Cryo EM<br />
**[[7ea5]] - XlH3 (mutant) + H4 + H2A + H2B in nucleosome + SET2 – Cryo EM<br />
**[[7ea5]] - XlH3 (mutant) + H4 + H2A + H2B in nucleosome + SET2 – Cryo EM<br />
-
**[[6s01]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br />
+
**[[6s01]], [[8pc5]], [[8peo]], [[8pep]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br />
**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF2H – Cryo EM<br />
**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF2H – Cryo EM<br />
 +
**[[7eg6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SNF5 – Cryo EM<br />
 +
**[[7egp]] - XlH3.2 + H4 + H2A + H2B in nucleosome + SWI/SNF – Cryo EM<br />
 +
**[[6ltj]] - XlH3.3 + H4 + H2A + H2B in nucleosome + BAF complex – Cryo EM<br />
**[[5o9g]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD1 – Cryo EM<br />
**[[5o9g]] - XlH3.2 + H4 + H2A + H2B in nucleosome + CHD1 – Cryo EM<br />
**[[6x0n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PARP2 + HPF1 – Cryo EM<br />
**[[6x0n]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PARP2 + HPF1 – Cryo EM<br />
Line 162: Line 209:
**[[6zhx]], [[6zhy]], [[7enn]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + ALC1 – Cryo EM<br />
**[[6zhx]], [[6zhy]], [[7enn]] - XlH3.2 + H3 + H4 + H2A + H2B in nucleosome + ALC1 – Cryo EM<br />
**[[6tem]] - XlH4 + H2A + H2B in nucleosome + CenP-A – Cryo EM<br />
**[[6tem]] - XlH4 + H2A + H2B in nucleosome + CenP-A – Cryo EM<br />
 +
**[[7u4d]] - XlH4 + H2A + H2B in nucleosome + CenP-A + Cenp-N – Cryo EM<br />
**[[4zux]] – XlH3.2 + H4 + H2A + H2B in nucleosome + Saga-associated factors + polyubiquitin + UBP8<br />
**[[4zux]] – XlH3.2 + H4 + H2A + H2B in nucleosome + Saga-associated factors + polyubiquitin + UBP8<br />
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulator of chromosome condensation<br />
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B in nucleosome + regulator of chromosome condensation<br />
Line 170: Line 218:
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br />
**[[6rny]] - hH3.3 + H4 + H2A + H2B in nucleosome + integrase – Cryo EM<br />
**[[6t9l]] – XlH3 + H4 + H2A + H2B in nucleosome + SAGA complex – Cryo EM<br />
**[[6t9l]] – XlH3 + H4 + H2A + H2B in nucleosome + SAGA complex – Cryo EM<br />
 +
**[[8g86]], [[8g88]], [[8g8b]] - XlH3 + H4 + H2A + H2B in nucleosome + OCT4 – Cryo EM<br />
 +
**[[7vvu]] - XlH3 + H4 + H2A + H2B in nucleosome + EAF6 +YNG2 + ESA1 – Cryo EM<br />
 +
**[[7vvz]] - XlH3 + H4 + H2A + H2B in nucleosome + EAF6 +YNG2 + ESA1 + NUA4 – Cryo EM<br />
 +
**[[7xfh]], [[7xfm]] - XlH3.2 + H4 + H2A + H2B in nucleosome + ADPG – Cryo EM<br />
 +
**[[8gpn]] - XlH3.2 + H4 + H2A + H2B in nucleosome + menin – Cryo EM<br />
 +
**[[8pc6]] - XlH3.2 + H4 + H2A + H2B in nucleosome + PC4 and SFRS1-interacting protein – Cryo EM<br />
 +
**[[7ssa]] - XlH3.2 + H4 + H2A + H2B in nucleosome + Cbf1 – Cryo EM<br />
*Other nucleosome core + DNA
*Other nucleosome core + DNA
Line 175: Line 230:
**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain in nucleosome – mouse<br />
**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain in nucleosome – mouse<br />
**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B in nucleosome<br />
**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B in nucleosome<br />
 +
**[[7dbh]], [[7vbm]] – mH3mm18 + H4 + H2A + H2B in nucleosome – Cryo EM<br />
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B in nucleosome <br />
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B in nucleosome <br />
**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B in nucleosome<br />
**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B in nucleosome<br />
Line 186: Line 242:
**[[6dzt]] - DmH3 + H4 + H2A + H2B in nucleosome + antibody <br />
**[[6dzt]] - DmH3 + H4 + H2A + H2B in nucleosome + antibody <br />
**[[6xws]], [[6xwt]] - DmH4 + CenP-A + CAL1 <br />
**[[6xws]], [[6xwt]] - DmH4 + CenP-A + CAL1 <br />
-
**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + RNA – Cryo EM<br />
+
**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]], [[7zs9]], [[7zsa]], [[7zsb]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + RNA – Cryo EM<br />
**[[6ir9]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + SPT4 + SPT5 + RNA – Cryo EM<br />
**[[6ir9]] – yH3.3 + H4 + H2A + H2B in nucleosome + RNA polymerase + SPT4 + SPT5 + RNA – Cryo EM<br />
**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B in nucleosome + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA – Cryo EM<br />
**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B in nucleosome + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA – Cryo EM<br />
Line 194: Line 250:
**[[5z3v]], [[5z3u]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B in nucleosome + SNF2 – Cryo EM<br />
**[[5z3v]], [[5z3u]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B in nucleosome + SNF2 – Cryo EM<br />
**[[7k7g]] - yH3 + H4 + H2A + H2B in nucleosome + CenP-3 – Cryo EM<br />
**[[7k7g]] - yH3 + H4 + H2A + H2B in nucleosome + CenP-3 – Cryo EM<br />
 +
**[[7z0o]] - yH3 + H4 + H2A + H2B in nucleosome + RNA polymerase transcription initiation factors – Cryo EM<br />
 +
**[[7e9c]], [[7e9f]] - yH3 + H4 + H2A + H2B in nucleosome + origin recognition complex subunit 1 – Cryo EM<br />
**[[6qld]] - yH3 + H4 + H2A + H2B in kinetochore + CenP-A – Cryo EM<br />
**[[6qld]] - yH3 + H4 + H2A + H2B in kinetochore + CenP-A – Cryo EM<br />
-
**[[6kxv]] - H3 + hH4 + hH2A + hH2B in nucleosome – ''Leishmania major''<br />
+
**[[7on1]] - yH4 + H2A + H2B in nucleosome + CenP-A + CenP-C – Cryo EM<br />
 +
**[[7k78]] - yH4 + H2A + H2B in nucleosome + Sce4 + ScfV – Cryo EM<br />
 +
**[[6kxv]] - H3 + H4 + H2A + H2B in nucleosome – ''Leishmania major<''br />
 +
**[[7d69]] - H3 + H4 + H2A + H2B in nucleosome – ''Giardia intestinalis'' – Cryo EM<br />
 +
**[[7wlr]] - H3 + H4 + H2A + H2B in nucleosome – ''Komagataella pastoris'' – Cryo EM<br />
 +
**[[7n8n]] - H3 + H4 + H2A + H2B in nucleosome – Melbournevirus – Cryo EM<br />
 +
**[[7lv8]], [[7lv9]] - H3 + H4 + H2A + H2B in nucleosome – Marseillevirus – Cryo EM<br />
*Chromatosome core + DNA
*Chromatosome core + DNA
Line 201: Line 265:
**[[6la2]], [[6la8]], [[6la9]], [[6lab]], [[7cow]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome <br />
**[[6la2]], [[6la8]], [[6la9]], [[6lab]], [[7cow]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome <br />
**[[7dbp]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome – Cryo EM<br />
**[[7dbp]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome – Cryo EM<br />
 +
**[[8h1t]] - hH3.1 + H4 + H2A + H2B + H1.4 + BAP1 + ASXL1 + Ub in chromatosome – Cryo EM<br />
**[[7k5x]], [[7k5y]], [[7k60]], [[7k61]], [[7k63]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome + scFv – Cryo EM<br />
**[[7k5x]], [[7k5y]], [[7k60]], [[7k61]], [[7k63]] - hH3.1 + H4 + H2A + H2B + H1.0 in chromatosome + scFv – Cryo EM<br />
**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 in chromatosome<br
**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 in chromatosome<br

Current revision

3D Structures of histone

Updated on 23-August-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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