This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

1th5

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Structural highlights

1th5 is a 1 chain structure with sequence from Oryza sativa. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NIFU1_ORYSJ Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

NifU-like proteins are a highly conserved protein that serves as the scaffold for assembly of Fe-S clusters. Chloroplastic NifU-like proteins have tandem NifU like domains, named domain I and domain II. Although the amino acid sequences of these domains are very similar to each other, the predicted functional region for the Fe-S cluster assembly, the CXXC motif, exists only in domain I. The structure of the domain II of chloroplastic NifU-like protein OsNifU1A has an alpha-beta sandwich structure containing two alpha helices located on one side of the beta-sheet. The electrostatic surface potential of OsNifU1A domain II is predominantly positively charged. Chloroplastic NifU-like proteins are targeted to ferredoxin for transferring the Fe-S cluster. The ferredoxin presents an overall negatively charged surface, which may evoke an electrostatic association with OsNifU1A domain II.

The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.,Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:17431550^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kumeta H, Ogura K, Asayama M, Katoh S, Katoh E, Teshima K, Inagaki F. The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A. J Biomol NMR. 2007 Jun;38(2):161-4. Epub 2007 Apr 13. PMID:17431550 doi:10.1007/s10858-007-9155-9

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1th5"

@@ Line 1: / Line 1: @@
 ==Solution structure of C-terminal domain of NifU-like protein from Oryza sativa==
-<StructureSection load='1th5' size='340' side='right'caption='[[1th5]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1th5' size='340' side='right'caption='[[1th5]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Orysa Orysa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TH5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1th5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TH5 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1q48|1q48]]</div></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1th5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1th5 OCA], [https://pdbe.org/1th5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1th5 RCSB], [https://www.ebi.ac.uk/pdbsum/1th5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1th5 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/NIFU1_ORYSJ NIFU1_ORYSJ]] Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity).
+[https://www.uniprot.org/uniprot/NIFU1_ORYSJ NIFU1_ORYSJ] Molecular scaffold for [Fe-S] cluster assembly of chloroplastic iron-sulfur proteins (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 33: / Line 33: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Orysa]]
+[[Category: Oryza sativa]]
-[[Category: Asayama, M]]
+[[Category: Asayama M]]
-[[Category: Inagaki, F]]
+[[Category: Inagaki F]]
-[[Category: Katoh, E]]
+[[Category: Katoh E]]
-[[Category: Katoh, S]]
+[[Category: Katoh S]]
-[[Category: Kumeta, H]]
+[[Category: Kumeta H]]
-[[Category: Ogura, K]]
+[[Category: Ogura K]]
-[[Category: Iron-sulfur cluster binding]]
-[[Category: Program for rice genome research]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]

1th5

From Proteopedia

Current revision

Solution structure of C-terminal domain of NifU-like protein from Oryza sativa

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox