7vj6

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(New page: '''Unreleased structure''' The entry 7vj6 is ON HOLD Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wa...)
Current revision (17:26, 29 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7vj6 is ON HOLD
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==SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state==
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<StructureSection load='7vj6' size='340' side='right'caption='[[7vj6]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7vj6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_mazei_Go1 Methanosarcina mazei Go1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJ6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vj6 OCA], [https://pdbe.org/7vj6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vj6 RCSB], [https://www.ebi.ac.uk/pdbsum/7vj6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vj6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q8PYK9_METMA Q8PYK9_METMA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Flavin coenzymes are universally found in biological redox reactions. DNA photolyases, with their flavin chromophore (FAD), utilize blue light for DNA repair and photoreduction. The latter process involves two single-electron transfers to FAD with an intermittent protonation step to prime the enzyme active for DNA repair. Here we use time-resolved serial femtosecond X-ray crystallography to describe how light-driven electron transfers trigger subsequent nanosecond-to-microsecond entanglement between FAD and its Asn/Arg-Asp redox sensor triad. We found that this key feature within the photolyase-cryptochrome family regulates FAD re-hybridization and protonation. After first electron transfer, the FAD(*-) isoalloxazine ring twists strongly when the arginine closes in to stabilize the negative charge. Subsequent breakage of the arginine-aspartate salt bridge allows proton transfer from arginine to FAD(*-). Our molecular videos demonstrate how the protein environment of redox cofactors organizes multiple electron/proton transfer events in an ordered fashion, which could be applicable to other redox systems such as photosynthesis.
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Authors: Maestre-Reyna, M., Yang, C.-H., Huang, W.C., Nango, E., Gusti-Ngurah-Putu, E.-P., Franz-Badur, S., Wu, W.-J., Wu, H.-Y., Wang, P.-H., Liao, J.-H., Lee, C.-C., Huang, K.-F., Chang, Y.-K., Weng, J.-H., Sugahara, M., Owada, S., Joti, Y., Tanaka, R., Tono, K., Kiontke, S., Yamamoto, J., Iwata, S., Essen, L.-O., Bessho, Y., Tsai, M.-D.
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Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.,Maestre-Reyna M, Yang CH, Nango E, Huang WC, Ngurah Putu EPG, Wu WJ, Wang PH, Franz-Badur S, Saft M, Emmerich HJ, Wu HY, Lee CC, Huang KF, Chang YK, Liao JH, Weng JH, Gad W, Chang CW, Pang AH, Sugahara M, Owada S, Hosokawa Y, Joti Y, Yamashita A, Tanaka R, Tanaka T, Luo F, Tono K, Hsu KC, Kiontke S, Schapiro I, Spadaccini R, Royant A, Yamamoto J, Iwata S, Essen LO, Bessho Y, Tsai MD Nat Chem. 2022 Apr 7. pii: 10.1038/s41557-022-00922-3. doi:, 10.1038/s41557-022-00922-3. PMID:35393554<ref>PMID:35393554</ref>
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Description: SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Franz-Badur, S]]
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<div class="pdbe-citations 7vj6" style="background-color:#fffaf0;"></div>
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[[Category: Maestre-Reyna, M]]
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== References ==
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[[Category: Essen, L.-O]]
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<references/>
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[[Category: Gusti-Ngurah-Putu, E.-P]]
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__TOC__
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[[Category: Iwata, S]]
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</StructureSection>
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[[Category: Owada, S]]
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[[Category: Large Structures]]
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[[Category: Huang, K.-F]]
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[[Category: Methanosarcina mazei Go1]]
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[[Category: Yang, C.-H]]
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[[Category: Bessho Y]]
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[[Category: Bessho, Y]]
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[[Category: Chang Y-K]]
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[[Category: Tsai, M.-D]]
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[[Category: Essen L-O]]
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[[Category: Chang, Y.-K]]
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[[Category: Franz-Badur S]]
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[[Category: Sugahara, M]]
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[[Category: Gusti-Ngurah-Putu E-P]]
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[[Category: Wu, H.-Y]]
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[[Category: Huang K-F]]
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[[Category: Nango, E]]
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[[Category: Huang WC]]
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[[Category: Huang, W.C]]
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[[Category: Iwata S]]
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[[Category: Tanaka, R]]
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[[Category: Joti Y]]
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[[Category: Weng, J.-H]]
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[[Category: Kiontke S]]
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[[Category: Lee, C.-C]]
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[[Category: Lee C-C]]
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[[Category: Yamamoto, J]]
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[[Category: Liao J-H]]
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[[Category: Tono, K]]
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[[Category: Maestre-Reyna M]]
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[[Category: Wang, P.-H]]
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[[Category: Nango E]]
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[[Category: Kiontke, S]]
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[[Category: Owada S]]
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[[Category: Joti, Y]]
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[[Category: Sugahara M]]
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[[Category: Liao, J.-H]]
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[[Category: Tanaka R]]
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[[Category: Wu, W.-J]]
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[[Category: Tono K]]
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[[Category: Tsai M-D]]
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[[Category: Wang P-H]]
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[[Category: Weng J-H]]
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[[Category: Wu H-Y]]
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[[Category: Wu W-J]]
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[[Category: Yamamoto J]]
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[[Category: Yang C-H]]

Current revision

SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state

PDB ID 7vj6

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