7vjq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "7vjq" [edit=sysop:move=sysop])
Current revision (17:27, 29 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7vjq is ON HOLD
+
==Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate==
 +
<StructureSection load='7vjq' size='340' side='right'caption='[[7vjq]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7vjq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_phage_ZF40 Pectobacterium phage ZF40] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=7cqa 7cqa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VJQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VJQ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.79&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vjq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vjq OCA], [https://pdbe.org/7vjq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vjq RCSB], [https://www.ebi.ac.uk/pdbsum/7vjq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vjq ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/H9C180_9CAUD H9C180_9CAUD]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
It has been shown that phages have evolved anti-CRISPR (Acr) proteins to inhibit host CRISPR-Cas systems. Most acr genes are located upstream of anti-CRISPR-associated (aca) genes, which is instrumental for identifying these acr genes. Thus far, eight Aca families (Aca1-Aca8) have been identified, all proteins of which share low sequence homology and bind to different target DNA sequences. Recently, Aca1 and Aca2 proteins were discovered to function as repressors by binding to acr-aca promoters, thus implying a potential anti-anti-CRISPR mechanism. However, the structural basis for the repression roles of Aca proteins is still unknown. Here, we elucidated apo-structures of Aca1 and Aca2 proteins and their complex structures with their cognate operator DNA in two model systems, the Pseudomonas phage JBD30 and the Pectobacterium carotovorum template phage ZF40. In combination with biochemical and cellular assays, our study unveils dimerization and DNA-recognition mechanisms of Aca1 and Aca2 family proteins, thus revealing the molecular basis for Aca1-and Aca2-mediated anti-CRISPR repression. Our results also shed light on understanding the repression roles of other Aca family proteins and autoregulation roles of acr-aca operons.
-
Authors:
+
Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2.,Liu Y, Zhang L, Guo M, Chen L, Wu B, Huang H J Biol Chem. 2021 Dec;297(6):101357. doi: 10.1016/j.jbc.2021.101357. Epub 2021, Oct 28. PMID:34756887<ref>PMID:34756887</ref>
-
Description:
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
 +
<div class="pdbe-citations 7vjq" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pectobacterium phage ZF40]]
 +
[[Category: Synthetic construct]]
 +
[[Category: Huang HD]]
 +
[[Category: Liu YH]]
 +
[[Category: Wu BX]]
 +
[[Category: Zhang LS]]

Current revision

Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate

PDB ID 7vjq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools