3drm

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Current revision (12:51, 30 August 2023) (edit) (undo)
 
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<StructureSection load='3drm' size='340' side='right'caption='[[3drm]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3drm' size='340' side='right'caption='[[3drm]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3drm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3drm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DRM FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dru|3dru]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SERPINA1, AAT, PI, PRO0684, PRO2209 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3drm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3drm OCA], [https://pdbe.org/3drm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3drm RCSB], [https://www.ebi.ac.uk/pdbsum/3drm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3drm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3drm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3drm OCA], [https://pdbe.org/3drm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3drm RCSB], [https://www.ebi.ac.uk/pdbsum/3drm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3drm ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[https://www.uniprot.org/uniprot/A1AT_HUMAN A1AT_HUMAN]] Defects in SERPINA1 are the cause of alpha-1-antitrypsin deficiency (A1ATD) [MIM:[https://omim.org/entry/613490 613490]]. A disorder whose most common manifestation is emphysema, which becomes evident by the third to fourth decade. A less common manifestation of the deficiency is liver disease, which occurs in children and adults, and may result in cirrhosis and liver failure. Environmental factors, particularly cigarette smoking, greatly increase the risk of emphysema at an earlier age.<ref>PMID:1905728</ref> <ref>PMID:2390072</ref> <ref>PMID:2227940</ref>
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[https://www.uniprot.org/uniprot/A1AT_HUMAN A1AT_HUMAN] Defects in SERPINA1 are the cause of alpha-1-antitrypsin deficiency (A1ATD) [MIM:[https://omim.org/entry/613490 613490]. A disorder whose most common manifestation is emphysema, which becomes evident by the third to fourth decade. A less common manifestation of the deficiency is liver disease, which occurs in children and adults, and may result in cirrhosis and liver failure. Environmental factors, particularly cigarette smoking, greatly increase the risk of emphysema at an earlier age.<ref>PMID:1905728</ref> <ref>PMID:2390072</ref> <ref>PMID:2227940</ref>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/A1AT_HUMAN A1AT_HUMAN]] Inhibitor of serine proteases. Its primary target is elastase, but it also has a moderate affinity for plasmin and thrombin. Irreversibly inhibits trypsin, chymotrypsin and plasminogen activator. The aberrant form inhibits insulin-induced NO synthesis in platelets, decreases coagulation time and has proteolytic activity against insulin and plasmin.[:]<ref>PMID:1906855</ref> <ref>PMID:1406456</ref> Short peptide from AAT: reversible chymotrypsin inhibitor. It also inhibits elastase, but not trypsin. Its major physiological function is the protection of the lower respiratory tract against proteolytic destruction by human leukocyte elastase (HLE).[:]<ref>PMID:1906855</ref> <ref>PMID:1406456</ref>
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[https://www.uniprot.org/uniprot/A1AT_HUMAN A1AT_HUMAN] Inhibitor of serine proteases. Its primary target is elastase, but it also has a moderate affinity for plasmin and thrombin. Irreversibly inhibits trypsin, chymotrypsin and plasminogen activator. The aberrant form inhibits insulin-induced NO synthesis in platelets, decreases coagulation time and has proteolytic activity against insulin and plasmin.[:]<ref>PMID:1906855</ref> <ref>PMID:1406456</ref> Short peptide from AAT: reversible chymotrypsin inhibitor. It also inhibits elastase, but not trypsin. Its major physiological function is the protection of the lower respiratory tract against proteolytic destruction by human leukocyte elastase (HLE).[:]<ref>PMID:1906855</ref> <ref>PMID:1406456</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Barrett, T E]]
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[[Category: Barrett TE]]
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[[Category: Gooptu, B]]
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[[Category: Gooptu B]]
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[[Category: Lomas, D A]]
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[[Category: Lomas DA]]
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[[Category: Mallya, M]]
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[[Category: Mallya M]]
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[[Category: Nobeli, I]]
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[[Category: Nobeli I]]
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[[Category: Phillips, R L]]
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[[Category: Phillips RL]]
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[[Category: Purkiss, A]]
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[[Category: Purkiss A]]
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[[Category: Acute phase]]
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[[Category: Alpha1-antitrypsin]]
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[[Category: Alternative splicing]]
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[[Category: Blood coagulation]]
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[[Category: Cirrhosis]]
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[[Category: Conformational disease]]
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[[Category: Disease mutation]]
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[[Category: Emphysema]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase]]
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[[Category: Hydrolase inhibitor]]
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[[Category: Polymerisation]]
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[[Category: Polymorphism]]
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[[Category: Protease]]
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[[Category: Protease inhibitor]]
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[[Category: Rational drug design]]
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[[Category: Secreted]]
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[[Category: Serine protease inhibitor]]
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[[Category: Serine proteinase inhibitor]]
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[[Category: Serpin]]
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Current revision

2.2 Angstrom Crystal Structure of Thr114Phe Alpha1-Antitrypsin

PDB ID 3drm

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