|
|
| (One intermediate revision not shown.) |
| Line 1: |
Line 1: |
| | | | |
| | ==S4wyild== | | ==S4wyild== |
| - | <StructureSection load='2lxe' size='340' side='right'caption='[[2lxe]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2lxe' size='340' side='right'caption='[[2lxe]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2lxe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LXE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2lxe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LXE FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SUVR4, SDG31, SET31, At3g04380, T27C4.2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Histone-lysine_N-methyltransferase Histone-lysine N-methyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.43 2.1.1.43] </span></td></tr>
| + | |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lxe OCA], [https://pdbe.org/2lxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lxe RCSB], [https://www.ebi.ac.uk/pdbsum/2lxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lxe ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lxe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lxe OCA], [https://pdbe.org/2lxe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lxe RCSB], [https://www.ebi.ac.uk/pdbsum/2lxe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lxe ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/SUVR4_ARATH SUVR4_ARATH]] Histone methyltransferase (By similarity).
| + | [https://www.uniprot.org/uniprot/SUVR4_ARATH SUVR4_ARATH] Histone methyltransferase (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 26: |
Line 25: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Arath]] | + | [[Category: Arabidopsis thaliana]] |
| - | [[Category: Histone-lysine N-methyltransferase]]
| + | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Aalen, R B]] | + | [[Category: Aalen RB]] |
| - | [[Category: Kristiansen, P]] | + | [[Category: Kristiansen P]] |
| - | [[Category: Rahman, M A]] | + | [[Category: Rahman MA]] |
| - | [[Category: A-helical]]
| + | |
| - | [[Category: Transferase]]
| + | |
| - | [[Category: Ubiqutine binding domain]]
| + | |
| Structural highlights
Function
SUVR4_ARATH Histone methyltransferase (By similarity).
Publication Abstract from PubMed
In eukaryotes, different chromatin states facilitate or repress gene expression and restrict the activity of transposable elements. Post-translational modifications (PTMs) of amino acid residues on the N-terminal tails of histones are suggested to define such states. The histone lysine methyltransferase (HKMTase) SU(VAR)3-9 RELATED4 (SUVR4) of Arabidopsis thaliana functions as a repressor of transposon activity. Binding of ubiquitin by the WIYLD domain facilitates the addition of two methyl groups to monomethylated lysine 9 of histone H3. By using nuclear magnetic resonance (NMR) spectroscopy, we identified SUVR4 WIYLD (S4WIYLD) as a domain with a four-helix bundle structure, in contrast to three-helix bundles of other ubiquitin binding domains. NMR titration analyses showed that residues of helix alpha1 (Q38, L39, and D40) and helix alpha4 (N68, T70, A71, V73, D74, I76, S78, and E82) of S4WIYLD and residues between the first and second beta-strands (T9 and G10) and on beta-strands 3 (R42, G47, K48, and Q49) and 4 (H68, R72, and L73) undergo significant chemical shift changes when the two proteins interact. A model of the complex, generated using HADDOCK, suggests that the N-terminal and C-terminal parts of S4WIYLD constitute a surface that interacts with charged residues close to the hydrophobic patch of ubiquitin. The WIYLD domains of the closely related SUVR1 and SUVR2 Arabidopsis proteins also bind ubiquitin, indicating that this is a general feature of this domain. The question of whether SUVR proteins act as both readers of monoubiquitinated H2B and writers of histone PTMs is discussed.
The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure.,Rahman MA, Kristiansen PE, Veiseth SV, Andersen JT, Yap KL, Zhou MM, Sandlie I, Thorstensen T, Aalen RB Biochemistry. 2014 Apr 8;53(13):2091-100. doi: 10.1021/bi401436h. Epub 2014 Mar, 25. PMID:24625295[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Rahman MA, Kristiansen PE, Veiseth SV, Andersen JT, Yap KL, Zhou MM, Sandlie I, Thorstensen T, Aalen RB. The arabidopsis histone methyltransferase SUVR4 binds ubiquitin via a domain with a four-helix bundle structure. Biochemistry. 2014 Apr 8;53(13):2091-100. doi: 10.1021/bi401436h. Epub 2014 Mar, 25. PMID:24625295 doi:http://dx.doi.org/10.1021/bi401436h
|
