This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1y89
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='1y89' size='340' side='right'caption='[[1y89]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='1y89' size='340' side='right'caption='[[1y89]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1y89]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1y89]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y89 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y89 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=PE5:3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL'>PE5</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4 | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PE:NONAETHYLENE+GLYCOL'>2PE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PE5:3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL'>PE5</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y89 OCA], [https://pdbe.org/1y89 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y89 RCSB], [https://www.ebi.ac.uk/pdbsum/1y89 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y89 ProSAT], [https://www.topsan.org/Proteins/MCSG/1y89 TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y89 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y89 OCA], [https://pdbe.org/1y89 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y89 RCSB], [https://www.ebi.ac.uk/pdbsum/1y89 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y89 ProSAT], [https://www.topsan.org/Proteins/MCSG/1y89 TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q9KL51_VIBCH Q9KL51_VIBCH] Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.[ARBA:ARBA00002681][RuleBase:RU365095] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 21: | Line 23: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: | + | [[Category: Vibrio cholerae O1 biovar El Tor str. N16961]] |
| - | [[Category: Chruszcz | + | [[Category: Chruszcz M]] |
| - | [[Category: Cymborowski | + | [[Category: Cymborowski M]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | [[Category: Lazarski | + | [[Category: Lazarski K]] |
| - | [[Category: Lezondra | + | [[Category: Lezondra L]] |
| - | + | [[Category: Minor W]] | |
| - | [[Category: Minor | + | [[Category: Zhang R]] |
| - | [[Category: Zhang | + | [[Category: Zheng H]] |
| - | [[Category: Zheng | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of devB protein
| |||||||||||

